Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02260 ATGCTTGAGAAAGAAGTGATTGAACCCAGGAATCAGGAACGGTACCAAGGCAAAAACCCTTACTATAGATATGACATGGAGCCTTTTAGGGTGAGGAGGAAAGATTTTTGGTTGTTCTCTACTGTCACAAAACTTTTGAACGAATTCATTCCAAAACTCTCGCATGATGCAGATGGTCTCATATTTCAGGGATGGGACGATCCTTATGTACCTCGCACTCATGAAGGTCTCTTAAAGTGGAAGTATGCTGATCTGGATTCAGTTGATTTTCTCTTTGAGATTGATGATGATCGTCAGCTTCTTTTTCTCTATGAACGTGGAAAAAAGAAACTCATGGAAGGGTATATTGTTGCATTCGAAGCAAGTATTTTTGGGGAAGTTTCTATAGATTTTGCTGATTATGCCGAAGCTACAAAGATTTCTTTAGTTTCTCTTCCCATCAAGAATTCACATTCTGATGCTGTCTTGCATGTATCAATCCAGAGATTACATGAAAATACTGATAGGAGCTTAAGGACCTATTTAAGCAATGGTGATCTTAATGGATGA 549 0.3843 MLEKEVIEPRNQERYQGKNPYYRYDMEPFRVRRKDFWLFSTVTKLLNEFIPKLSHDADGLIFQGWDDPYVPRTHEGLLKWKYADLDSVDFLFEIDDDRQLLFLYERGKKKLMEGYIVAFEASIFGEVSIDFADYAEATKISLVSLPIKNSHSDAVLHVSIQRLHENTDRSLRTYLSNGDLNG 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02260 182 Pfam mRNA capping enzyme, catalytic domain 1 81 IPR001339 GO:0004484|GO:0005524|GO:0006370
Trre16g02260 182 PANTHER MRNA-CAPPING ENZYME 1 116 - -
Trre16g02260 182 Gene3D DNA ligase/mRNA capping enzyme 1 81 - -
Trre16g02260 182 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 3 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02260 Trre-Chr16 18436752 18438734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02260 1 119 Protein tyrosine phosphatase (PTP) family AT3G09100 69.167 2.95e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02260 K13917 - gmx:100803597 236.113