Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02259 ATGGATGAAGGACAATCTAAAACACATACAGAGACATTAGCTACTATTGGATACCTTGCACCAGAGTATGGAACTAGTGGAATTGTTTCTGTCAAAGGAGATGTGTACAGCTATGGAATTATGCTAATGGAAATCTTCACAAGAAAAAAACCAGCAGATGATATGTTTGTTGCAGAGCTAAGTTTGAAAACATGGATCAGTGGATCATTGCCTAATTCTATTCTTGAGGTCTTGGATTCTAATTTAGTCCAACAATGTGGGGAGCAAATTGATGACATGGTTACATACATGTCAACTATTTTTGGTTTAGCCCTTCATTGTTGTGAATATTCACCTGAGGCAAGAATTAATATGGCAGATGTTGCTGCTTCCCTAATCAAACTCAAGAATTTGGCTCTTAGCAGAAACATGATCTAG 417 0.3717 MDEGQSKTHTETLATIGYLAPEYGTSGIVSVKGDVYSYGIMLMEIFTRKKPADDMFVAELSLKTWISGSLPNSILEVLDSNLVQQCGEQIDDMVTYMSTIFGLALHCCEYSPEARINMADVAASLIKLKNLALSRNMI 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02259 138 ProSiteProfiles Protein kinase domain profile. 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02259 138 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 1 124 - -
Trre16g02259 138 SUPERFAMILY Protein kinase-like (PK-like) 6 129 IPR011009 -
Trre16g02259 138 Gene3D Transferase(Phosphotransferase) domain 1 1 136 - -
Trre16g02259 138 Pfam Protein tyrosine and serine/threonine kinase 4 124 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02259 Trre-Chr16 18432592 18433145 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02259 14 129 Receptor kinase-like Gene Family AT3G47570 37.069 1.16e-23 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre16g02259 PK_Tyr_Ser-Thr 1.7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02259 - K13420 mtr:25502843 226.483