Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02229 ATGGATCCGGGAGCGATGATGAACGAGGGTTCATTTCCGAATGGGAGTGGAAATACGACACCGTTTAGTTTAGCGGAGATCTGGCAGTTTCCAGCTACGATTAATGGCGGCGGAGGTGGATTGGGATTAAGGAGACCACAGTTTGGTAACGGTTTAGGACAGTTTGGTGATTTTGGTACCGGTTCGAACCGGGATGTTAGTGGACCGGAGTCAAGAGTTGTTTTGAACCATGGTGGTAAGAAGAGGCGTGACTCCGAAGATGATTCTGCTAAGTGTGTTTCCACCAGCAATGGCGGTGCCAATGCCGTGAATGATGGTGATGGAAAATGGACTAAAGCATCGGGGAACAGGAATGAAGGTGGTGATGGTAAAGTTGAAGGAGAAGCCAGTTCAGGAAAGCCTGCGGAGCAAAGCAGTAAACCACCTCCTCCCGACCCTCCTAAGCAAGATTACATCCACGTCCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAACGCGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATCTTGTTCCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCACTTCAGCGCCAAGTAGAGTTTTTATCGATGAAGCTCGAAGCAGTTAATTCAAGACTGAACACCGGCATTGAAGCCTTTCCTCCAAAAGATTTTGGTCAACAAACATTTGATCTTGCCGGCATGCCATTTGTTTCACAAACTACAAGAGAGCCAAGCAGAGGTTCATCCCCAGAATGGTTACATATGCAGGTAGGCGGCGGTTTCGAAAGAACAACGTAG 846 0.4657 MDPGAMMNEGSFPNGSGNTTPFSLAEIWQFPATINGGGGGLGLRRPQFGNGLGQFGDFGTGSNRDVSGPESRVVLNHGGKKRRDSEDDSAKCVSTSNGGANAVNDGDGKWTKASGNRNEGGDGKVEGEASSGKPAEQSSKPPPPDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEAFPPKDFGQQTFDLAGMPFVSQTTREPSRGSSPEWLHMQVGGGFERTT 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02229 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 210 IPR011598 GO:0046983
Trre16g02229 281 FunFam Basic helix-loop-helix transcription factor 157 229 - -
Trre16g02229 281 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
Trre16g02229 281 MobiDBLite consensus disorder prediction 75 90 - -
Trre16g02229 281 MobiDBLite consensus disorder prediction 39 151 - -
Trre16g02229 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 227 IPR036638 GO:0046983
Trre16g02229 281 Gene3D - 157 233 IPR036638 GO:0046983
Trre16g02229 281 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 78 249 IPR024097 GO:0006355
Trre16g02229 281 SMART finulus 166 216 IPR011598 GO:0046983
Trre16g02229 281 CDD bHLH_AtBPE_like 151 235 - -
Trre16g02229 281 MobiDBLite consensus disorder prediction 255 281 - -
Trre16g02229 281 Coils Coil 207 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02229 Trre-Chr16 18151365 18154204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02229 1 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 58.537 1.68e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g02229 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02229 - - gmx:100784478 382.874