Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02227 ATGATGAAAGGATGGGATGGGATTCAATCTTCTGTCTCTTCTTCTCGATCGAGTTCCACGATAAGCCATCGAGTTCCTTCTCAATCGGTTCGACTCGGACGAGTCCAACCTCAGGCTCCAACTTTTCGCACAATTTTCTGTAACGATCGTGAAGCCAATCATCCTGTTCGATTCAAGGGAAATTCAATATCAACTACAAAATATAACTTTTTCACCTTTCTGCCAAAAGGATTATTTGAACAGTTCAGACGGGTGGCTAATCTCTACTTTCTTTCAATCTCAATTTTATCAACTACCCCAATTAGTCCTGTCTCTCCAATAACTAATGTGCTTCCTCTATCTTTGGTGCTTCTCGTTTCTCTTATTAAGGAAGCTTTTGAGGATTGGAAGCGTTTTCAAAATGACATGTCCATAAACAACAAAAAGGTAGATGTTTTACAAGATCAAAAGTGGGAGTCTATGCCCTGGAAAAAGTTGCAGGTCGGAGATATTATCAAGGTTAAGCAGGATGGATTCTTTCCTGCAGATTTGCTTTTCTTGGCCAGTACGAATGCAGATGGTGTCTGTTACATCGAGACTGCTAATTTGGACGGTGAGACCAATTTGAAGATTAGGAAAGCATTGGAAAAGACCTGGGATTACCTGACTCCAGAGAAGGCATCTGAGTTTAAAGGTGAAATTCAGTGTGAGCAACCAAACAATTCATTGTATACATTTACTGGAAATCTTTTGACTCAAAAGCAAACACTTCCCCTCAGTCCAAACCAGATTCTTTTGCGAGGATGCAGTCTCAGAAATACAGAGTATATTGTTGGTGTCGTTCTTTTTACAGGACAGGAAACCAAGGTGATGATGAATTCAATGAATGTTCCTTCCAAAAGAAGTACGTTGGAGAGGAAACTTGACAAGCTCATACTTGCTCTTTTTGCAACACTCTTTATGATGTGTTTTATTGGAGCCATAGGCAGTGCTATTTTTGTGAACAAAAAATACTTTTACTTACATCTTGATTCATCAGAGGAGGGATCGGCACAGTTCAATCCAAAAAACAGATTTGTGGTTTTTGTTCTGACTATGTTTACCCTTATCACACTATATTCAACAATCATCCCAATCTCACTTTATGTGTCTATAGAGATGATAAAATTTATCCAATCAACTCAATTTATCAACAAAGATTTGGGCATGTACCACAATGAAAGCAATACACCGGCATTGGCCAGAACTTCAAATCTGAATGAAGAACTTGGACAGGTGGAATACATTTTCTCTGACAAAACTGGGACCCTAACAAGAAACTTAATGGAGTTCTTCAAGTGTTCAATTGGAGCAGAGGTCTATGGAAATGGTGTGACCGAAATTGAGAGGGGACTAGCAGAGCGCAATGGCATGAAAATTGAGGAAAATAGATCGCCCAATGCTGTGCATGAGAAGGGTTTTAATTTTGATGATATGCGGCTTATGCGAGGAGCTTGGAGAAATGAGCCCAATCCAGATGCCTGCAAAGAATTCTTCAGATGCCTTGCTATATGCCATACTGTACTTCCAGAGGGTGATGAGAAGTCCCCTGAAATGATCAAATATCAAGCTGCATCACCTGATGAGGCTGCTTTAGTTATTGCTGCAAAGCACTTTGGTTTTTTCTTCTACAGGCGCACACCTACAATGATATATGTTCGTGAATCACATGTTGAGAAGATGGGAAAAGTTCAAGATGTATCCTATGAGATTCTCAATGTGCTTGAATTTAATAGTACAAGGAAGCGTCAGTCAGTTGTATGTCGTTATCCAGATGGAAGGCTTGTACTATACTGTAAGGGTGCTGACACTGTAATCTATGAGAGACTGGCTGATTCTAACAACGATATCAAGAAAATCACCAGGGAGTATTTGGAGCAATTTGGATCTTCTGGACTACGTACATTATGCCTGGCTTACAAAGAATTGCATCCAAATGTTTATGAAAGTTGGAATGAGAAGTTTATCCAGGCCAAATCTTCTCTCCATGATCGTGAAAAGAAGTTAGACGAGGTGGCAGAACTCATAGAAAATGATCTCATTTTAATTGGTAGCACTGCAATAGAAGACAAGCTTCAAGAAGGAGTACCAAGATGCATAGAGACTCTTCAAAGAGCTGGCATTAAAATTTGGGTTCTGACAGGGGACAAGATTGAAACAGCAATTAACATAGCCTATGCATGCAGTTTGATAAACAATGAGATGAAGCAATTCGTTATCAGTTCAGAAACTGATGCAATTAGAGAAGTTGAAGACAGGGGTGACCAAGTGGAAATTGCACGATTTATTAAAGACGAAGTGAAAAGACAGCTGAAGAAATGCCTTGAGGAAGCACAAAGCTATTTTCACACTGTATCTGGACCAAAATTAGCACTTGTAATTGATGGGAAGTGTCTAATGTATGCATTGGATCCAAGTTTAAGGGTGATGCTACTCAATCTTAGTTTGAATTGTCATGCTGTTGTTTGCTGCCGGGTTTCTCCTTTACAGAAAGCACAGGTCACAAGTATGGTCAAGAAAGGTGCAAAGAAAATAACCCTTAGTATTGGTGATGGAGCCAATGATGTAAGTATGATTCAGGCTGCTCATGTTGGTGTTGGCATAAGTGGAATGGAGGGAATGCAAGCTGTGATGGCTAGTGATTTTGCCATTGCACAGTTCCGTTACCTTGAAGATTTGCTTCTCGTTCATGGCCGATGGTCATATCTTCGAATATGCAAGGTGGTGATATACTTCTTTTACAAGAATCTCACATTTACTCTTACTCAATTTTGGTTTACTTTTCAAACTGGGTTCTCTGGTCAAAGGTTCTATGATGATTGGTTTCAGTCTCTCTATAATGTTATTTTCACGGCACTGCCTGTGATCATTGTTGGACTATTTGACAAGGATGTTAGTGCATCTTTATCGAAGAAGTATCCCGAATTATACATGGAAGGAATAAAAAATGTCTTCTTCAAATGGAAAGTCGTGGCTATATGGGCCTTTTTTTCGGTGTACCAGTCTCTAATATTTTTCTATTTTGTGAGTACTTCAAATTTAAGTGCTAAAAACTCGGCGGGAAAGATATTTGGACTCTGGGATGTCAGTACAATGGCCTTCACTTGTGTTGTAGTAACCGTCAACTTGAGATTACTTATGATTTGTAATTCAATCACAAGATGGCACTACATTAGTGTTGGTGGAAGCATATTAGCTTGGTTTGTTTTTATTTTTATATATTCAGGGATTACCACTCCGTATGATCGACAGGAGAATATTTATTTTGTCATATATGTCTTGATGAGTACGCTCTATTTCTACGTCACACTACTACTTGTTCCTGTTGCTGCACTTTTCTGTGACTTTGTTTATCAAGGGGTTCAAAGATGGTTCTTCCCCTATGATTATCAGATTGTTCAAGAAATACATAGACATGAGATTGATAGCACTGGTAGAGCACAGCTGCTGGAGATAGGGAACCAGCTTACTCCAACTGAGGCAAGGAGCTATGCCATTTCTCAACTCCCACGTGAGATATCAAAGCACACCGGATTTGCTTTCGATTCACCTGGTTATGAGTCTTTTTTCGCTGCACAACTTGGTGCATATGCTCCACCAAAGGCATGGGATGTTGCAAGACGAGCTAGCATGAGATCACGGCCCAAGACTGAGCAGCAAAAGTAA 3684 0.3971 MMKGWDGIQSSVSSSRSSSTISHRVPSQSVRLGRVQPQAPTFRTIFCNDREANHPVRFKGNSISTTKYNFFTFLPKGLFEQFRRVANLYFLSISILSTTPISPVSPITNVLPLSLVLLVSLIKEAFEDWKRFQNDMSINNKKVDVLQDQKWESMPWKKLQVGDIIKVKQDGFFPADLLFLASTNADGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEIQCEQPNNSLYTFTGNLLTQKQTLPLSPNQILLRGCSLRNTEYIVGVVLFTGQETKVMMNSMNVPSKRSTLERKLDKLILALFATLFMMCFIGAIGSAIFVNKKYFYLHLDSSEEGSAQFNPKNRFVVFVLTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLGMYHNESNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGAEVYGNGVTEIERGLAERNGMKIEENRSPNAVHEKGFNFDDMRLMRGAWRNEPNPDACKEFFRCLAICHTVLPEGDEKSPEMIKYQAASPDEAALVIAAKHFGFFFYRRTPTMIYVRESHVEKMGKVQDVSYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKGADTVIYERLADSNNDIKKITREYLEQFGSSGLRTLCLAYKELHPNVYESWNEKFIQAKSSLHDREKKLDEVAELIENDLILIGSTAIEDKLQEGVPRCIETLQRAGIKIWVLTGDKIETAINIAYACSLINNEMKQFVISSETDAIREVEDRGDQVEIARFIKDEVKRQLKKCLEEAQSYFHTVSGPKLALVIDGKCLMYALDPSLRVMLLNLSLNCHAVVCCRVSPLQKAQVTSMVKKGAKKITLSIGDGANDVSMIQAAHVGVGISGMEGMQAVMASDFAIAQFRYLEDLLLVHGRWSYLRICKVVIYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPELYMEGIKNVFFKWKVVAIWAFFSVYQSLIFFYFVSTSNLSAKNSAGKIFGLWDVSTMAFTCVVVTVNLRLLMICNSITRWHYISVGGSILAWFVFIFIYSGITTPYDRQENIYFVIYVLMSTLYFYVTLLLVPVAALFCDFVYQGVQRWFFPYDYQIVQEIHRHEIDSTGRAQLLEIGNQLTPTEARSYAISQLPREISKHTGFAFDSPGYESFFAAQLGAYAPPKAWDVARRASMRSRPKTEQQK 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02227 1227 Pfam Phospholipid-translocating P-type ATPase C-terminal 883 1133 IPR032630 -
Trre16g02227 1227 Pfam Cation transport ATPase (P-type) 520 615 - -
Trre16g02227 1227 FunFam Phospholipid-transporting ATPase 532 687 - -
Trre16g02227 1227 SFLD C1.7: P-type atpase like 405 906 - -
Trre16g02227 1227 Gene3D - 553 687 IPR023299 GO:0000166
Trre16g02227 1227 MobiDBLite consensus disorder prediction 7 28 - -
Trre16g02227 1227 Gene3D - 688 895 IPR023214 -
Trre16g02227 1227 CDD P-type_ATPase_APLT_Dnf-like 60 1015 - -
Trre16g02227 1227 NCBIfam HAD-IC family P-type ATPase 828 934 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g02227 1227 MobiDBLite consensus disorder prediction 1 28 - -
Trre16g02227 1227 Gene3D - 123 287 - -
Trre16g02227 1227 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Trre16g02227 1227 PRINTS P-type cation-transporting ATPase superfamily signature 855 874 - -
Trre16g02227 1227 SUPERFAMILY HAD-like 411 897 IPR036412 -
Trre16g02227 1227 SUPERFAMILY Calcium ATPase, transmembrane domain M 57 1133 IPR023298 -
Trre16g02227 1227 SFLD p-type atpase 405 906 IPR044492 -
Trre16g02227 1227 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 429 702 IPR023299 GO:0000166
Trre16g02227 1227 FunFam Phospholipid-transporting ATPase 119 288 - -
Trre16g02227 1227 FunFam Phospholipid-transporting ATPase 688 895 - -
Trre16g02227 1227 Pfam E1-E2 ATPase 139 379 - -
Trre16g02227 1227 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 37 1182 - -
Trre16g02227 1227 Pfam Phospholipid-translocating ATPase N-terminal 45 109 IPR032631 -
Trre16g02227 1227 SUPERFAMILY Calcium ATPase, transduction domain A 140 284 IPR008250 -
Trre16g02227 1227 FunFam Phospholipid-transporting ATPase IC 420 432 - -
Trre16g02227 1227 NCBIfam phospholipid-translocating P-type ATPase 58 1141 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trre16g02227 1227 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02227 Trre-Chr16 18118356 18136865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02227 11 1226 Primary Pumps ATPases AT1G59820 79.622 0.0 2068
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02227 K14802 - gmx:100815547 2268.81