Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02226 ATGATGATGTCGTCTTCGTCAAGTGGTGGAGCATTCAGGCTTCGTTGGGATGTATTTTTAAGTTTCAGAGGAGAAAATACACGCAAATGTTTCACAAAAAAACTGTACGAATCTCTTCATCGTGAAGGAATTCGTGCTTTCATGGACGACGAGGGTTTGGATCGTGGTGACGACATACAAACAAGTTTACTTCAAGCCATTGATGACTCTGCTGCTTCCATTGTTATTATTTCTAAAAACTATGCTGATTCTCATTGGTGTCTCGATGAACTCGCCAGGATTTGTGATTCAGGGAGGCTTGTTATTCCTGTTTTCTATAAGGTTGATCCTTCTCATGTTAGGAAACAATTGGATCCTTTTAAAAAAGGTTTTGATGATCTTGAAATAAGGTTTCAAGATCAGAAAGATAAGGTTCAGAAGTGGAGAGATTCTATGCTTAAAGTTGGTGGATTTGCTGGTTTTGTTGTCAAAGATAATAGTGATGATGTCGAGCATGAGAATCTGATACGCCGATTGGTACAAAGGGTTTTGAAGGAGTTAAGTAATACTCCAATGGTTGTGTCTGAGTTTGCAGTGGGGCTCAACAAACGTGTTGACAAGGTGATGGATTTATTACAAGTTCGTTCCAACGGTGTTAAGGTCTTGGGGTTGTATGGGATGGGTGGTGTTGGTAAGACAACCCTAGCAAAGGCTCTTTTCAATAGTCTTGTTGGTCGTTTTGAGCGTAGATGCTTTGTTTCCAATGTGAGACAATTTTCATCTAAAGAAGATGGTTTGGTTTCTCTTCAAAGCAATGTCATTAAAGATCTTTCTCCTGAAAATGCTCACAGTGTTATCGGTGATGTCAATGCTGGTATATCTGTTATCAAAAGTATAATTCGTGAAAATCGAGTTCTGCTAGTGTTGGATGATGTTGATAATGTAAATCAGCTTGATGCTTTGATTGGTAAAAGGGAGCGGTTTTATGAAGGAAGCTGTATAATAATTACAACAAGGGATATAACTGTTTTGCCTGAAAAACATGTCAATAAGTTGTATGAAGTTACAGAATTGGATACTGAAGAAGCTCTAGAGTTATTCAGTTACCATGCACTAAGGAAAAAGGAACCTCCACAAAATCTTCTGGATTTTTCAAATAAAATTGTGTCTCTTACAGGAAGAATGCCATTGGCTTTGGAAGTGTTTGGTTGCTTTCTGTTTGGTAAGAGGAGGGTGCAGGAATGGGAGGATGCTGTTGAAAAGCTGAGAACAATTCGCCCCGGGAGTCTTCATGATGTGTTGAAGATAAGTTATGATGGATTGGATGAACAAGAGAAGTGTATATTCCTTGATATTGCTTGTTTCTTTGTTCAAATGGGAACGAAGCGCGATGATGTGATTGATATATTGAGAGGTTGTGGTTTTAGTGGAGAGATAGCTATGACCAATCTTGTAGAGAAATGCTTAATCAAAATAAGACAGCATGACAATACCTTGTGGATGCATGATCAGATTAGAGATATGGGAAGACAGATTGTACTTAATGAAAACCATGTCGATCCTGGGATGCGTAGTAGATTGTGGGATCGTGCTGAAATCATGTCTGTTTTGAAGAGTAAGAAGGGAACAAGATGCGTACAAGGAATTGTACTAGACTTTAAGGCAGGTCCGAGTTATCCTCATCAACCTCAAGCAGACAAAGTTATACTTGATACAAAATCTTTTGAACCAATGGTTAGCTTGAGATTGCTTCAGATCAATAATTTGAGTTTGGAAGGCAAGTTTCTGCCAGATGAACTGAAGTGGCTACAATGGCGAGGTTGTCCTTTAGAAGGCATACCTTTGGATACTTTGCCACGTGAACTGGCTGTCCTCGATCTCTCAAATGGCCAGAAAATTGAAAGCTTGCGGGGATTTGAAAGTCACAAGGTACCAGAGAACCTAATGGTTATAAACCTCTCCGACTGCTACAGACTTGCTGCAATCCCTGATTTATCTTGGTGTCTCAAGCTAGAGAAAATTAATTTGGAGAGCTGCATTAATCTAAAAAGGATTCATGAATCAATTGGAAGTTTAACTACCTTGCGTAATTTGAATTTGACGCGTTGTGAAAAGCTTATTGAACTTCCTAGTGATATCTCTGGACTGAAACATTTGGAGAGCCTCTTTCTTTCTGAGTGCAAAATGTTGAAAGCATTACCAGAAAACATAGGTATTCTTAAATCTCTGAAAACACTTTTTGCGGATGACACAGCTATAGTAAAGTTGCCAGAGTCCATTTTCCGCCTGACAAAACTCGAACGACTTGTTTTAAATCGTTGCTATTATCTGATAAGACTACCAAACTGCATTGGAAAACTATGTTCATTGCAAGAATTATCTCTTGATCAATCAGGTTTACAAGAATTACCCGACACTGTCGGATCCTTGAAAAATCTTGAGAAATTAAGTTTGATTTGGTGTAAATCTCTCACTCAAATGCCTGATTCCATAGGAAATCTTGAATCGTTAACAGAACTTTTGGCTTACAACAGTGGAATTAAAGAACTTCCTTCCACCATTGGTTGTTTATCCTATCTGAGTTCATTATCGGTCGGAGGGTGTAAGCTTCTCAGTACATTGCCTGACTCATTTAGATCTCTGGCATCAATTACTGAACTTCAGTTAGATGGAACATCTATCAGATATCTTCCAGATGAAATTGGAGAAATGAAACAACTGAGGAAACTTGAGATTGGGAATTGTAGTAATCTAGAATCATTACCAGAATCCATTGGCCACCTAGCATCTCTTACTACACTGAACATAGTCAATGGAAATATAAGAGAATTGCCAGCATCGATTGGATTACTAGACAATCTTGTTACCTTAACATTGAACAAATGTAGAATGCTTAAACAGCTTCCAGCTTCTATAGGAAACCTGAAATCTCTATGTCACTTAAAGATGGAGGAAACAGCTATAAAAGACTTGCCTGAAAGTTTCGGTATGCTCTCAAGCCTGAGATCACTGAGAATGGCAAAGAGGCCTCATTTAGTTCCAATATCAATGGAGAACACTGGTTCTTTTGTGTTACCGTCTTCATTCTGTAATCTGACCTTGCTATATGAGTTGGATGCTCGTGCCTGGAGACTATCTGGGAAAATTCCGGATGATTTTGAGAAGCTGTCATTATTAGAGACTTTAAATTTGGGCCAAAACAATTTTCACAGCCTTCCTTCCAGTTTGAAAGGTCTTTCCTTTCTGAAGACGCTGTCACTGCCAAATTGCAGAGAGCTGATTTCTCTCCCCTCACTTCCTTCAAGCTTGATCAAGCTAAACGCTGATAACTGTTGTGCATTAGAAACGATACACGACATGTCAAATTTAGAGAGTTTGGAGGAGTTGAAACTCACAAATTGTGAGAAAGTGGTGGATATTCCAGGTCTTGAATGCTTGAAGTCCTTGAAAAGACTGTACTTGAGTGGTTGCAATGCATGCTCCTCTAAAGTATGCAAAAGACTTTCAAAGGTTGCACTGAGAAATTTTCAGAACTTGAGCATGCCAGGAAATAAATTACCTGAATGGTTTTCAGCAGAAACTGTAAGCTTTTCGAAGCGGAAAAATCTCGAGTTAACAAGTGTAGTTGTAGGTGTTATCGTTTCAATTAACCACAACATTGATATACCTATAAAGAGAGAAGAAATGCCTGGAATCATTGATGTTGAAGCAAGTGTTTTCAAACTTGGGAAACGAATATTTAATACAACTTTAAACATACTTGGGGTGCCAAGGACAAATGTAGATCACATTCACTTGTGTAGGTTCCAGAATTACCATCAATTGGTAGCCTTTTTAAAAGATGCTGATACATTTTGTGTGACCGCGAGAAATCCTCCTTTTGATAAAGGATTGAAGTTGAAGAAATGCGGAGTTCATTTAATCTTCGAAGGGGATGATGATTATGAGGGAGAAGAAGAATCGTTGGACGTAGGCCTACATTCTGTCTCGGAAAGGCTGGCCAGGTTTTTTAACACTTGTGATGAAGGTGTTGATGTCACCTATGAAACTGAGAGTGATGATAAGTTTCAACATGAATTGGAGCAAGAAAAAGAAAAGCATGGAATTAGATTACTTTCTGTTAAAGGAAATTCTATACTTCTCTTCCTGCTTAGTGTATCATTTGTGCTGTTGAGTTGGTTTTGGTTGAGCTGTGTCCCAAGTGCTGAAAGAAGAGACTGA 4200 0.3864 MMMSSSSSGGAFRLRWDVFLSFRGENTRKCFTKKLYESLHREGIRAFMDDEGLDRGDDIQTSLLQAIDDSAASIVIISKNYADSHWCLDELARICDSGRLVIPVFYKVDPSHVRKQLDPFKKGFDDLEIRFQDQKDKVQKWRDSMLKVGGFAGFVVKDNSDDVEHENLIRRLVQRVLKELSNTPMVVSEFAVGLNKRVDKVMDLLQVRSNGVKVLGLYGMGGVGKTTLAKALFNSLVGRFERRCFVSNVRQFSSKEDGLVSLQSNVIKDLSPENAHSVIGDVNAGISVIKSIIRENRVLLVLDDVDNVNQLDALIGKRERFYEGSCIIITTRDITVLPEKHVNKLYEVTELDTEEALELFSYHALRKKEPPQNLLDFSNKIVSLTGRMPLALEVFGCFLFGKRRVQEWEDAVEKLRTIRPGSLHDVLKISYDGLDEQEKCIFLDIACFFVQMGTKRDDVIDILRGCGFSGEIAMTNLVEKCLIKIRQHDNTLWMHDQIRDMGRQIVLNENHVDPGMRSRLWDRAEIMSVLKSKKGTRCVQGIVLDFKAGPSYPHQPQADKVILDTKSFEPMVSLRLLQINNLSLEGKFLPDELKWLQWRGCPLEGIPLDTLPRELAVLDLSNGQKIESLRGFESHKVPENLMVINLSDCYRLAAIPDLSWCLKLEKINLESCINLKRIHESIGSLTTLRNLNLTRCEKLIELPSDISGLKHLESLFLSECKMLKALPENIGILKSLKTLFADDTAIVKLPESIFRLTKLERLVLNRCYYLIRLPNCIGKLCSLQELSLDQSGLQELPDTVGSLKNLEKLSLIWCKSLTQMPDSIGNLESLTELLAYNSGIKELPSTIGCLSYLSSLSVGGCKLLSTLPDSFRSLASITELQLDGTSIRYLPDEIGEMKQLRKLEIGNCSNLESLPESIGHLASLTTLNIVNGNIRELPASIGLLDNLVTLTLNKCRMLKQLPASIGNLKSLCHLKMEETAIKDLPESFGMLSSLRSLRMAKRPHLVPISMENTGSFVLPSSFCNLTLLYELDARAWRLSGKIPDDFEKLSLLETLNLGQNNFHSLPSSLKGLSFLKTLSLPNCRELISLPSLPSSLIKLNADNCCALETIHDMSNLESLEELKLTNCEKVVDIPGLECLKSLKRLYLSGCNACSSKVCKRLSKVALRNFQNLSMPGNKLPEWFSAETVSFSKRKNLELTSVVVGVIVSINHNIDIPIKREEMPGIIDVEASVFKLGKRIFNTTLNILGVPRTNVDHIHLCRFQNYHQLVAFLKDADTFCVTARNPPFDKGLKLKKCGVHLIFEGDDDYEGEEESLDVGLHSVSERLARFFNTCDEGVDVTYETESDDKFQHELEQEKEKHGIRLLSVKGNSILLFLLSVSFVLLSWFWLSCVPSAERRD 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02226 1399 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 153 IPR035897 -
Trre16g02226 1399 ProSiteProfiles TIR domain profile. 14 177 IPR000157 GO:0007165
Trre16g02226 1399 Gene3D - 350 435 IPR042197 -
Trre16g02226 1399 Gene3D Ribonuclease Inhibitor 727 1007 IPR032675 -
Trre16g02226 1399 Pfam TIR domain 16 184 IPR000157 GO:0007165
Trre16g02226 1399 Gene3D Ribonuclease Inhibitor 1008 1089 IPR032675 -
Trre16g02226 1399 SMART LRR_typ_2 921 944 IPR003591 -
Trre16g02226 1399 SMART LRR_typ_2 733 756 IPR003591 -
Trre16g02226 1399 SMART LRR_typ_2 827 850 IPR003591 -
Trre16g02226 1399 SMART LRR_typ_2 1049 1071 IPR003591 -
Trre16g02226 1399 SMART LRR_typ_2 968 990 IPR003591 -
Trre16g02226 1399 SMART LRR_typ_2 780 803 IPR003591 -
Trre16g02226 1399 SMART LRR_typ_2 874 897 IPR003591 -
Trre16g02226 1399 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 182 - -
Trre16g02226 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 445 IPR027417 -
Trre16g02226 1399 Gene3D Ribonuclease Inhibitor 560 726 IPR032675 -
Trre16g02226 1399 SUPERFAMILY L domain-like 494 995 - -
Trre16g02226 1399 SUPERFAMILY RNI-like 936 1181 - -
Trre16g02226 1399 Gene3D Ribonuclease Inhibitor 1090 1204 IPR032675 -
Trre16g02226 1399 Gene3D - 178 345 IPR027417 -
Trre16g02226 1399 Pfam NB-ARC domain 196 421 IPR002182 GO:0043531
Trre16g02226 1399 SMART till_3 15 151 IPR000157 GO:0007165
Trre16g02226 1399 Gene3D - 13 177 IPR035897 -
Trre16g02226 1399 PRINTS Disease resistance protein signature 385 399 - -
Trre16g02226 1399 PRINTS Disease resistance protein signature 214 229 - -
Trre16g02226 1399 PRINTS Disease resistance protein signature 895 911 - -
Trre16g02226 1399 PRINTS Disease resistance protein signature 292 306 - -
Trre16g02226 1399 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 833 IPR044974 GO:0006952
Trre16g02226 1399 SMART LRR_CC_2 661 688 IPR006553 -
Trre16g02226 1399 SMART LRR_CC_2 1116 1142 IPR006553 -
Trre16g02226 1399 SMART LRR_CC_2 897 924 IPR006553 -
Trre16g02226 1399 SMART LRR_CC_2 850 877 IPR006553 -
Trre16g02226 1399 SMART LRR_CC_2 803 836 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02226 Trre-Chr16 18108844 18115825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02226 16 856 WRKY Transcription Factor Family AT4G12020 29.896 1.22e-75 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02226 - - mtr:11408681 2255.71