Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02219 ATGCAAGGTGGTGAAACTATGCAGGGGGCTTGTGGTTATGGTGATCTTTTCCAACAAGGGTATGGGCTTGAAACCACGGCACTAAGCACCGCATTATTCAACAAAGGCTATAGTTGTGGTGCATGTTTTGAGATCAAGTGTGTCAACGATCCTCAATGGTGTCTAAAAAATGTGAATTCAATTACCGTTACCGCAACAAATTTTTGTCCTCCCAATTATGTTGATGGCAGTTGGTGTAATCCTCCTCACAAACACTTTGACTTGAGCATGAAAATGTTTACAACTATTGCCATTTACAAAGCAGGTATCATCCCCGTTCAATATCGACGTGTTCCTTGCGTCAAAAGTGGTGGTGTTAGGTTTGAGCTTAGAGGAAACCCTTACTTTTTAATGGTTTTGGTGTACAATGTTGCTAATGCTGGTGATGTTTCACGTGTGGTTATCAAAGGATCTAATAGTGATTGGGCTCCAATGACACATAATTGGGGACAAGTTTGGCATACAGGAATGAATTTGGTTGGACAAGACTTATCTTTCTGGGTTACTACAAGTGAAAGAAAAGCTTTGGAGTTTGTCTCTGTTATTCCTTCGAATTGGCAATTTGGACAAACTTATGAAGCCTCTAGAAATTTTTAA 636 0.3994 MQGGETMQGACGYGDLFQQGYGLETTALSTALFNKGYSCGACFEIKCVNDPQWCLKNVNSITVTATNFCPPNYVDGSWCNPPHKHFDLSMKMFTTIAIYKAGIIPVQYRRVPCVKSGGVRFELRGNPYFLMVLVYNVANAGDVSRVVIKGSNSDWAPMTHNWGQVWHTGMNLVGQDLSFWVTTSERKALEFVSVIPSNWQFGQTYEASRNF 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02219 211 Pfam Expansin C-terminal domain 119 196 IPR007117 -
Trre16g02219 211 SUPERFAMILY PHL pollen allergen 115 206 IPR036749 -
Trre16g02219 211 PRINTS Expansin/Lol pI family signature 101 117 IPR007118 GO:0005576
Trre16g02219 211 PRINTS Expansin/Lol pI family signature 7 25 IPR007118 GO:0005576
Trre16g02219 211 PRINTS Expansin/Lol pI family signature 155 169 IPR007118 GO:0005576
Trre16g02219 211 PRINTS Expansin/Lol pI family signature 29 47 IPR007118 GO:0005576
Trre16g02219 211 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Trre16g02219 211 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 8 118 IPR007112 -
Trre16g02219 211 PANTHER EXPANSIN-A15 2 210 IPR002963 GO:0009664
Trre16g02219 211 SMART dpbb_1 25 108 IPR007112 -
Trre16g02219 211 Gene3D - 118 211 IPR036749 -
Trre16g02219 211 PRINTS Expansin signature 93 106 IPR002963 GO:0009664
Trre16g02219 211 PRINTS Expansin signature 20 34 IPR002963 GO:0009664
Trre16g02219 211 PRINTS Expansin signature 117 129 IPR002963 GO:0009664
Trre16g02219 211 PRINTS Expansin signature 47 58 IPR002963 GO:0009664
Trre16g02219 211 PRINTS Expansin signature 61 71 IPR002963 GO:0009664
Trre16g02219 211 PRINTS Expansin signature 76 93 IPR002963 GO:0009664
Trre16g02219 211 PRINTS Expansin signature 164 185 IPR002963 GO:0009664
Trre16g02219 211 PRINTS Expansin signature 129 150 IPR002963 GO:0009664
Trre16g02219 211 PRINTS Expansin signature 193 209 IPR002963 GO:0009664
Trre16g02219 211 SUPERFAMILY Barwin-like endoglucanases 5 136 IPR036908 -
Trre16g02219 211 Gene3D - 1 113 IPR036908 -
Trre16g02219 211 Pfam Lytic transglycolase 25 108 IPR009009 -
Trre16g02219 211 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 128 207 IPR007117 -
Trre16g02219 211 CDD DPBB_EXPA_N 3 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02219 Trre-Chr16 18059177 18060199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02219 1 211 Expansin Gene Family AT5G39280 61.972 2.62e-101 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02219 - - gsj:114422475 332.798