LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g02219	ATGCAAGGTGGTGAAACTATGCAGGGGGCTTGTGGTTATGGTGATCTTTTCCAACAAGGGTATGGGCTTGAAACCACGGCACTAAGCACCGCATTATTCAACAAAGGCTATAGTTGTGGTGCATGTTTTGAGATCAAGTGTGTCAACGATCCTCAATGGTGTCTAAAAAATGTGAATTCAATTACCGTTACCGCAACAAATTTTTGTCCTCCCAATTATGTTGATGGCAGTTGGTGTAATCCTCCTCACAAACACTTTGACTTGAGCATGAAAATGTTTACAACTATTGCCATTTACAAAGCAGGTATCATCCCCGTTCAATATCGACGTGTTCCTTGCGTCAAAAGTGGTGGTGTTAGGTTTGAGCTTAGAGGAAACCCTTACTTTTTAATGGTTTTGGTGTACAATGTTGCTAATGCTGGTGATGTTTCACGTGTGGTTATCAAAGGATCTAATAGTGATTGGGCTCCAATGACACATAATTGGGGACAAGTTTGGCATACAGGAATGAATTTGGTTGGACAAGACTTATCTTTCTGGGTTACTACAAGTGAAAGAAAAGCTTTGGAGTTTGTCTCTGTTATTCCTTCGAATTGGCAATTTGGACAAACTTATGAAGCCTCTAGAAATTTTTAA	636	0.3994	MQGGETMQGACGYGDLFQQGYGLETTALSTALFNKGYSCGACFEIKCVNDPQWCLKNVNSITVTATNFCPPNYVDGSWCNPPHKHFDLSMKMFTTIAIYKAGIIPVQYRRVPCVKSGGVRFELRGNPYFLMVLVYNVANAGDVSRVVIKGSNSDWAPMTHNWGQVWHTGMNLVGQDLSFWVTTSERKALEFVSVIPSNWQFGQTYEASRNF	211

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g02219	211	Pfam	Expansin C-terminal domain	119	196	IPR007117	-
	Trre16g02219	211	SUPERFAMILY	PHL pollen allergen	115	206	IPR036749	-
	Trre16g02219	211	PRINTS	Expansin/Lol pI family signature	101	117	IPR007118	GO:0005576
	Trre16g02219	211	PRINTS	Expansin/Lol pI family signature	7	25	IPR007118	GO:0005576
	Trre16g02219	211	PRINTS	Expansin/Lol pI family signature	155	169	IPR007118	GO:0005576
	Trre16g02219	211	PRINTS	Expansin/Lol pI family signature	29	47	IPR007118	GO:0005576
	Trre16g02219	211	PRINTS	Expansin/Lol pI family signature	193	207	IPR007118	GO:0005576
	Trre16g02219	211	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	8	118	IPR007112	-
	Trre16g02219	211	PANTHER	EXPANSIN-A15	2	210	IPR002963	GO:0009664
	Trre16g02219	211	SMART	dpbb_1	25	108	IPR007112	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g02219	Trre-Chr16	18059177	18060199	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g02219	1	211	Expansin Gene Family	AT5G39280	61.972	2.62e-101	292

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g02219	-		-	gsj:114422475	332.798

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