Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02209 ATGGCGAGTGAAGGTGGTAAGAAACTAACTGAAGATGATGCCTTAGCATTTCTTAAGTCAGTCAAGGATGTTTTCAAAGATGAAGAGGAAAATTATAATTACTTTTTGGAAATAATGCATGATTACAAAGAAAAAAGAATTTATTACAATGATCTTATGACGAAGGTGAAGGAGTTATTTAAAGGACACAACGATCTAATTATGGGATTTAACATATTTGCACCAAGTGATTATCAAATCCCAGTTTCAAAAGAAGAAGACAAAGAAGAAGAACCTCCAAATAGGATTGTTGATGAATATCAAATGAAAAATCCATTAGAAGAAGCAAAACCTATTGATGCACAATCTCCTCTGATGATGCTTGGTGGAGATAATCTCATTGTGGCTCCATCAGGAAATGAACCATGTTCAATGAGAAAACTTGGTGGATATGAAGATGCTACAAAGTTTGTGACCAAGATTAAGATTCGGTTTGAAGGAGATGGCCATGTTTACAAGTCATTTCTCAACATCATGAACATGTTGGGAGAGGGAAAAAAATCTTACACCGATACTTATCATGAGGTTGCTGCACTTTTTGAAGGTCATGCAGATCTTCTTGATGAGTTAATTCAGTTTTTTCCTGGCACTTCAAGAGTAGAAGCCTCTACCTAA 654 0.3532 MASEGGKKLTEDDALAFLKSVKDVFKDEEENYNYFLEIMHDYKEKRIYYNDLMTKVKELFKGHNDLIMGFNIFAPSDYQIPVSKEEDKEEEPPNRIVDEYQMKNPLEEAKPIDAQSPLMMLGGDNLIVAPSGNEPCSMRKLGGYEDATKFVTKIKIRFEGDGHVYKSFLNIMNMLGEGKKSYTDTYHEVAALFEGHADLLDELIQFFPGTSRVEAST 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02209 217 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
Trre16g02209 217 SUPERFAMILY PAH2 domain 7 75 IPR036600 GO:0006355
Trre16g02209 217 PANTHER SIN3B-RELATED 9 211 IPR039774 GO:0003714
Trre16g02209 217 Gene3D Paired amphipathic helix 146 208 IPR036600 GO:0006355
Trre16g02209 217 FunFam Paired amphipathic helix protein Sin3 13 75 - -
Trre16g02209 217 FunFam Paired amphipathic helix SIN3-like protein 140 210 - -
Trre16g02209 217 ProSiteProfiles PAH domain profile. 139 210 IPR003822 GO:0006355
Trre16g02209 217 SUPERFAMILY PAH2 domain 144 208 IPR036600 GO:0006355
Trre16g02209 217 ProSiteProfiles PAH domain profile. 7 77 IPR003822 GO:0006355
Trre16g02209 217 Pfam Paired amphipathic helix repeat 30 73 IPR003822 GO:0006355
Trre16g02209 217 Pfam Paired amphipathic helix repeat 163 207 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02209 Trre-Chr16 17957833 17959497 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02209 9 116 WRKY Transcription Factor Family AT4G12020 35.185 3.97e-17 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre16g02209 PAH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02209 K11644 - tpra:123896139 376.711