Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02204 ATGAGTTCACAACTCAAACGTCCTGTGCTGTCTTCTAGAGGAGAACCCTCGGGGCAACCCCAAGTGATGAGTGGTGGTCAGAAGTTAACGACAAATGATGCCTTATCATATCTAAAGGCAGTAAGAGAAATGTTTCAAGATGACAAAGAAAAGTATGATGAATTTTTGGAAGTCATGAAGGATTTCAAGGCCCAAAGAATTGATACGGCTGGTGTCATAGAAAGAGTGAAGGAGCTATTTAAAGGCCATAAAGACTTAATTTTGGGGTTTAACACCTTCTTGCCAAAGGGTTATGCAATCACACTTCCATCGGAAAATGAACCACCTCCACTGAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTAGGCAAGATCAAGACTCGTTTTCAAGGAAATGATCGTGTTTATAAGACTTTTTTAGACATATTAAATATGTATAGAAAGGAAACCAAGACTATCACCGTGGTTTACCAAGAGGTTTCTGCCCTCTTCCAAGACCATGCAGATCTTCTTGAGGAGTTCACTCATTTTCTTCCGGATACTTCAGGAGCAGCCGCTGCTCATTTTGCTTCTGCTTCTGCTCGTAATTCTCTCCGTGATAGGAACTCTGCAATGCCAACAGTGAGGCAAACACATGTCGAAAAGAGAGAAAAGACAATAGCTTTGCATGCTGATCGTGATCTCGGCGTTGATCATTCTGATCCAGAACTTGACAGAGGTGTGATGAGGGCTGATAAGGAACAGAGAAGACGCGAGAGAGAAAAAGACCGTAGAGAAGAAAGAGATAGGAGAGAAAGGGAAAGGGATGATAGAGATTATGATAATGATGGTAATCGGGAGCATTTGTCCGTCAAGCGAAAATCTGGTCATAGGGCTGTAGATGCTGGTACGGAACCATCGCATGATGCAGATGAAAAGCTTGACATGCACCATATTTCGTCCGCTTCTGAGGATAAAAGTTCTTTGAAAAATATGTGTAGTCCAGTGCTTGCGTTCCTTGAAAAAGTCAAGGAGAAGTTGAGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAGGGAAATAATCACCCGACAAGAACTGCTGGCATTGGTGGGTGATTTACTCGGAAAATATGCTGATCTTATGGAGGGATTTGATGATTTTGTGACACAATGTGAAAAGAATGAAGGATTCCTTGCCGGTGTCATGAATAAAAGACATGGACCGAAACCTGTGAAGGTAGAGGACAAGGACAGAGATCGGGACAGGGATGACGGGGTGAAAGAAAGGGACCGTGAACTCCGAGAAAGAGACAAATCCACTGGAATTGCCAACAAGGATGTTTCTATTCCTAAGGTGTCTTTAAGCAAAGACAAGTATGTAGGAAAACCTATAAATGAACTGGACCTTTCTAATTGTGAACAATGTACTCCTAGTTACCGTCTTCTACCAAAAAATTACCCAATACCGATAGCTAGCCAAAGAACTGAACTTGGTGACGAAGTATTGAATGATCACTGGGTCTCTGTTACATCAGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGCGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGACGAATAAGAGAGTTGAAGAGATCTTAGACAAAGTTAATGCAAATATAATTCAAGGAGACATCCCAATTCGTATTGAGGAGCACTTAACACCACTAAATCTTAGGTGCATTGAACGATTATATGGTGACCATGGGCTTGATGTGATGGATGTGTTGAAAAAGAATGCATCTCTAGCTTTGCCAGTGATATTAACCCGCTTGAAGCAGAAACAGGAGGAGTGGGCAAGATGCCGTGCAGATTTCAATAAAGTTTGGGCTGAAATATATGCGAAGAATTATCACAAATCACTTGATCACCGAAGCTTTTACTTTAAGCAGCAGGATACAAAAAGCTTGAGCACTAAAGCCTTATTGGGAGAGATCAAAGAAGTTAGTGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCGATTCTTCCTAACTTGGAATTTGAGTATCCTGATCCAGATATTCACGAAGATTTGTATCAACTCATAAAATATTCATGTGGAGAAGTTTGTACAACCGAACAATTGGATAAAGTCATGAGGATTTGGACAACATTTTTAGAACCCATGCTTGGTGTTCCTTCTCGACGGCGCATTGCTGAAGACACAGAAGATGCTGTCAATGCTAAGAATGATTCTGGAAAAACTGGCACTGCAAGTATTCCCAAGGGTGATAGTAGTCCTGGTGTTGGTGTCACCGTAATGAATCCTAAGAATTCAAACACTAATAGAAATGGGGATGCTAGTGTTTCATTTCAACAATCAAATTCTTGCAAAGAATGGCAAACTAATGGGGTTGGCGGGGTTAAAGGGGACGGTTGTCTTGAATCAGACCGTTCTGCACCCAAGAATGAAACTTTGGGAAGTAGTACACTGCAAGGTAAAATGCCTATAAGTGCATCCATTCCTGATGAAGTATCAAGAGTCAACAAGCAAGATCATTCCATTGAACAGTTGGTGAATGCTAATGTATCACTGTCCTCTGGAATGGAGCAAAGTAATGGAAGAACAAACATTAATAATGCATCAGGACTTGCTGCAACTCTGTCTAGACCTGGTTTTGTTTCTAGTGAGGGAGGGCTTGATTTACCTTCATCAGAGGGTGGTGATTCTGCAAGACCAGATACGTCCACAAATGGGGGCGTCACCGAAGTCACCAAAGTTCACAGATGTCACAAAGAATCAGTTGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGATTTTGAAGAGGATAACTTTGCAGTTTATGCAAACGCTGGTCTGGAGGCAGTGCATAAAGGAAAAGATTTGAATACCAGTCAACAATACCAAAATAGACATGGAAAACAAATTTGTGGTGAAGCTGGAGGGGTAAATGATGATGAAAGTGATAGAAGTCCTCATAGATCATCGGACGACAGTGAAAATGCATCCGAGAATGGTGATGTTTCTGGTACAGAGTCTGCTGATGGTGAGGAATGTTCTCGAGAAGAACATGAAGAGGATGGGGATCATGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGGGGAAGGAATGGCTGATGCCAATGATGTTGAAGGAGACGGAGCCTCATTGCCATATTCAGAGCGCTTTCTTCTCACTGTAAAGCCTCTGGTAAAACATGTTCGTCCAGTGTTGCATGGGAAAGAAAAGAATGTTCAAATTTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCTTCTGCTGAAAGGAAATGGAGAGCTTCAAATGATACAAGTTCTACTGATCAATATGGAAGGTTCATGAATTCTCTTTACAGTTTACTGGATGGTTCTTCTGATAATTCAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAGTCATATGTCTTGTTCACGTTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCAAGTGCCACTGATGAGATGGATAACAAACTTCTTCAACTATATGCATATGAGCAATCAAGAAAACCTGGAAGCTTTGCTGATATAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAACATATATCGCATTGAGTGTTCATCTACACCAACCCGATTGTCTATTCAGTTGATGGACTATGGACATGATAAGCCTGAAGTGACTGCTGTGGCAATAGATCCTAATTTTTCAACATATCTGCACAATGATTTCCTATCTGTTGTTCCTGACAGTAAGGAGAGGTCGGGAGTTTTCTTAAAAAGGAATAAACTAAAATGTGGCTGGAGTGATGAATTTTCAAGTCAGGTCATAGATGAAGTACAAGTTATCAATGGTCTGGAGTGTAAGATTTCTTGCAATTCATCCAAGGTTTCATATGTTTTAGATACTGAAGACTCTTTATTTCGAGCAAAAAAGAAAAGGAGAACTTTGCAAACATATCGTGAACAGACAATGTCTTCAAACAATTGTTCAAGCAGATCACAGCGGTTCTGCAAATTGTTTTCCATCAAATGA 4212 0.4029 MSSQLKRPVLSSRGEPSGQPQVMSGGQKLTTNDALSYLKAVREMFQDDKEKYDEFLEVMKDFKAQRIDTAGVIERVKELFKGHKDLILGFNTFLPKGYAITLPSENEPPPLKKPVEFEEAINFVGKIKTRFQGNDRVYKTFLDILNMYRKETKTITVVYQEVSALFQDHADLLEEFTHFLPDTSGAAAAHFASASARNSLRDRNSAMPTVRQTHVEKREKTIALHADRDLGVDHSDPELDRGVMRADKEQRRREREKDRREERDRRERERDDRDYDNDGNREHLSVKRKSGHRAVDAGTEPSHDADEKLDMHHISSASEDKSSLKNMCSPVLAFLEKVKEKLRNPEDYQEFLKCLHIYSREIITRQELLALVGDLLGKYADLMEGFDDFVTQCEKNEGFLAGVMNKRHGPKPVKVEDKDRDRDRDDGVKERDRELRERDKSTGIANKDVSIPKVSLSKDKYVGKPINELDLSNCEQCTPSYRLLPKNYPIPIASQRTELGDEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTNKRVEEILDKVNANIIQGDIPIRIEEHLTPLNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLGEIKEVSEKKRKEDDVLLAIAAGNRRPILPNLEFEYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMRIWTTFLEPMLGVPSRRRIAEDTEDAVNAKNDSGKTGTASIPKGDSSPGVGVTVMNPKNSNTNRNGDASVSFQQSNSCKEWQTNGVGGVKGDGCLESDRSAPKNETLGSSTLQGKMPISASIPDEVSRVNKQDHSIEQLVNANVSLSSGMEQSNGRTNINNASGLAATLSRPGFVSSEGGLDLPSSEGGDSARPDTSTNGGVTEVTKVHRCHKESVGHFKSEREEGELSPNGDFEEDNFAVYANAGLEAVHKGKDLNTSQQYQNRHGKQICGEAGGVNDDESDRSPHRSSDDSENASENGDVSGTESADGEECSREEHEEDGDHEHDNKAESEGEGEGMADANDVEGDGASLPYSERFLLTVKPLVKHVRPVLHGKEKNVQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRASNDTSSTDQYGRFMNSLYSLLDGSSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASATDEMDNKLLQLYAYEQSRKPGSFADIVYHENARVLLHDENIYRIECSSTPTRLSIQLMDYGHDKPEVTAVAIDPNFSTYLHNDFLSVVPDSKERSGVFLKRNKLKCGWSDEFSSQVIDEVQVINGLECKISCNSSKVSYVLDTEDSLFRAKKKRRTLQTYREQTMSSNNCSSRSQRFCKLFSIK 1403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02204 1403 ProSiteProfiles PAH domain profile. 320 393 IPR003822 GO:0006355
Trre16g02204 1403 MobiDBLite consensus disorder prediction 409 441 - -
Trre16g02204 1403 MobiDBLite consensus disorder prediction 906 969 - -
Trre16g02204 1403 PANTHER SIN3B-RELATED 28 1264 IPR039774 GO:0003714
Trre16g02204 1403 MobiDBLite consensus disorder prediction 925 939 - -
Trre16g02204 1403 Pfam C-terminal domain of Sin3a protein 1118 1366 IPR031693 -
Trre16g02204 1403 MobiDBLite consensus disorder prediction 212 309 - -
Trre16g02204 1403 MobiDBLite consensus disorder prediction 941 963 - -
Trre16g02204 1403 SMART hdac_interact2seq4b 473 573 IPR013194 -
Trre16g02204 1403 ProSiteProfiles PAH domain profile. 113 183 IPR003822 GO:0006355
Trre16g02204 1403 MobiDBLite consensus disorder prediction 404 441 - -
Trre16g02204 1403 FunFam Paired amphipathic helix SIN3-like protein 112 183 - -
Trre16g02204 1403 Pfam Paired amphipathic helix repeat 137 180 IPR003822 GO:0006355
Trre16g02204 1403 Pfam Paired amphipathic helix repeat 346 389 IPR003822 GO:0006355
Trre16g02204 1403 Pfam Paired amphipathic helix repeat 50 94 IPR003822 GO:0006355
Trre16g02204 1403 SUPERFAMILY PAH2 domain 109 182 IPR036600 GO:0006355
Trre16g02204 1403 SUPERFAMILY PAH2 domain 26 96 IPR036600 GO:0006355
Trre16g02204 1403 Gene3D Paired amphipathic helix 112 184 IPR036600 GO:0006355
Trre16g02204 1403 MobiDBLite consensus disorder prediction 827 852 - -
Trre16g02204 1403 MobiDBLite consensus disorder prediction 1 27 - -
Trre16g02204 1403 Coils Coil 246 266 - -
Trre16g02204 1403 MobiDBLite consensus disorder prediction 1012 1030 - -
Trre16g02204 1403 MobiDBLite consensus disorder prediction 197 211 - -
Trre16g02204 1403 MobiDBLite consensus disorder prediction 1043 1071 - -
Trre16g02204 1403 Pfam Sin3 family co-repressor 475 565 IPR013194 -
Trre16g02204 1403 Gene3D Paired amphipathic helix 33 95 IPR036600 GO:0006355
Trre16g02204 1403 MobiDBLite consensus disorder prediction 1004 1084 - -
Trre16g02204 1403 MobiDBLite consensus disorder prediction 837 852 - -
Trre16g02204 1403 Coils Coil 546 566 - -
Trre16g02204 1403 MobiDBLite consensus disorder prediction 759 805 - -
Trre16g02204 1403 FunFam Paired amphipathic helix protein Sin3 33 95 - -
Trre16g02204 1403 ProSiteProfiles PAH domain profile. 27 97 IPR003822 GO:0006355
Trre16g02204 1403 MobiDBLite consensus disorder prediction 787 805 - -
Trre16g02204 1403 MobiDBLite consensus disorder prediction 196 309 - -
Trre16g02204 1403 Gene3D Paired amphipathic helix 323 395 IPR036600 GO:0006355
Trre16g02204 1403 SUPERFAMILY PAH2 domain 329 393 IPR036600 GO:0006355
Trre16g02204 1403 FunFam Paired amphipathic helix protein SIN3 322 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02204 Trre-Chr16 17890398 17903969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02204 19 109 WRKY Transcription Factor Family AT4G12020 55.319 2.51e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre16g02204 Sin3a_C 1.9e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02204 K11644 - gmx:100781798 2055.03