Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02203 ATGAGTTCACAACTCAAACGTCCTGTGCTGTCTTCTAGAGGAGAACCCTCGGGGCAACCCCAAGTGATGAGTGGTGGTCAGAAGTTAACGACAAATGATGCCTTATCATATCTAAAGGCAGTAAGAGAAATGTTTCAAGATGACAAAGAAAAGTATGATGAATTTTTGGAAGTCATGAAGGATTTCAAGGCCCAAAGAATTGATACGGCTGGTGTCATAGAAAGAGTGAAGGAGCTATTTAAAGGCCATAAAGACTTAATTTTGGGGTTTAACACCTTCTTGCCAAAGGGTTATGCAATCACACTTCCATCGGAAAATGAACCACCTCCACTGAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTAGGCAAGATCAAGACTCGTTTTCAAGGAAATGATCGTGTTTATAAGACTTTTTTAGACATATTAAATATGTATAGAAAGGAAACCAAGACTATCACCGTGGTTTACCAAGAGGTTTCTGCCCTCTTCCAAGACCATGCAGATCTTCTTGAGGAGTTCACTCATTTTCTTCCGGATACTTCAGGAGCAGCCGCTGCTCATTTTGCTTCTGCTTCTGCTCGTAATTCTCTCCGTGATAGGAACTCTGCAATGCCAACAGTGAGGCAAACACATGTCGAAAAGAGAGAAAAGACAATAGCTTTGCATGCTGATCGTGATCTCGGCGTTGATCATTCTGATCCAGAACTTGACAGAGGTGTGATGAGGGCTGATAAGGAACAGAGAAGACGCGAGAGAGAAAAAGACCGTAGAGAAGAAAGAGATAGGAGAGAAAGGGAAAGGGATGATAGAGATTATGATAATGATGGTAATCGGGAGCATTTGTCCGTCAAGCGAAAATCTGGTCATAGGGCTGTAGATGCTGGTACGGAACCATCGCATGATGCAGATGAAAAGCTTGACATGCACCATATTTCGTCCGCTTCTGAGGATAAAAGTTCTTTGAAAAATATGTGTAGTCCAGTGCTTGCGTTCCTTGAAAAAGTCAAGGAGAAGTTGAGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAGGGAAATAATCACCCGACAAGAACTGCTGGCATTGGTGGGTGATTTACTCGGAAAATATGCTGATCTTATGGAGGGATTTGATGATTTTGTGACACAATGTGAAAAGAATGGATTCCTTGCCGGTGTCATGAATAAAAAATCCTTGTGGAATGAAGGACATGGACCGAAACCTGTGAAGGTAGAGGACAAGGACAGAGATCGGGACAGGGATGACGGGGTGAAAGAAAGGGACCGTGAACTCCGAGAAAGAGACAAATCCACTGGAATTGCCAACAAGGATGTTTCTATTCCTAAGGTGTCTTTAAGCAAAGACAAGTATGTAGGAAAACCTATAAATGAACTGGACCTTTCTAATTGTGAACAATGTACTCCTAGTTACCGTCTTCTACCAAAAAATTACCCAATACCGATAGCTAGCCAAAGAACTGAACTTGGTGACGAAGTATTGAATGATCACTGGGTCTCTGTTACATCAGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGCGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGACGAATAAGAGAGTTGAAGAGATCTTAGACAAAGTTAATGCAAATATAATTCAAGGAGACATCCCAATTCGTATTGAGGAGCACTTAACACCACTAAATCTTAGGTGCATTGAACGATTATATGGTGACCATGGGCTTGATGTGATGGATGTGTTGAAAAAGAATGCATCTCTAGCTTTGCCAGTGATATTAACCCGCTTGAAGCAGAAACAGGAGGAGTGGGCAAGATGCCGTGCAGATTTCAATAAAGTTTGGGCTGAAATATATGCGAAGAATTATCACAAATCACTTGATCACCGAAGCTTTTACTTTAAGCAGCAGGATACAAAAAGCTTGAGCACTAAAGCCTTATTGGGAGAGATCAAAGAAGTTAGTGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCGATTCTTCCTAACTTGGAATTTGAGTATCCTGATCCAGATATTCACGAAGATTTGTATCAACTCATAAAATATTCATGTGGAGAAGTTTGTACAACCGAACAATTGGATAAAGTCATGAGGATTTGGACAACATTTTTAGAACCCATGCTTGGTGTTCCTTCTCGACGGCGCATTGCTGAAGACACAGAAGATGCTGTCAATGCTAAGAATGATTCTGGAAAAACTGGCACTGCAAGTATTCCCAAGGGTGATAGTAGTCCTGGTGTTGGTGTCACCGTAATGAATCCTAAGAATTCAAACACTAATAGAAATGGGGATGCTAGTGTTTCATTTCAACAATCAAATTCTTGCAAAGAATGGCAAACTAATGGGGTTGGCGGGGTTAAAGGGGACGGTTGTCTTGAATCAGACCGTTCTGCACCCAAGAATGAAACTTTGGGAAGTAGTACACTGCAAGGTAAAATGCCTATAAGTGCATCCATTCCTGATGAAGTATCAAGAGTCAACAAGCAAGATCATTCCATTGAACAGTTGGTGAATGCTAATGTATCACTGTCCTCTGGAATGGAGCAAAGTAATGGAAGAACAAACATTAATAATGCATCAGGACTTGCTGCAACTCTGTCTAGACCTGGTTTTGTTTCTAGTGAGGGAGGGCTTGATTTACCTTCATCAGAGGGTGGTGATTCTGCAAGACCAGATACGTCCACAAATGGGGGCGTCACCGAAGTCACCAAAGTTCACAGATGTCACAAAGAATCAGTTGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGATTTTGAAGAGGATAACTTTGCAGTTTATGCAAACGCTGGTCTGGAGGCAGTGCATAAAGGAAAAGATTTGAATACCAGTCAACAATACCAAAATAGACATGGAAAACAAATTTGTGGTGAAGCTGGAGGGGTAAATGATGATGAAAGTGATAGAAGTCCTCATAGATCATCGGACGACAGTGAAAATGCATCCGAGAATGGTGATGTTTCTGGTACAGAGTCTGCTGATGGTGAGGAATGTTCTCGAGAAGAACATGAAGAGGATGGGGATCATGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGGGGAAGGAATGGCTGATGCCAATGATGTTGAAGGAGACGGAGCCTCATTGCCATATTCAGAGCGCTTTCTTCTCACTGTAAAGCCTCTGGTAAAACATGTTCGTCCAGTGTTGCATGGGAAAGAAAAGAATGTTCAAATTTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCTTCTGCTGAAAGGAAATGGAGAGCTTCAAATGATACAAGTTCTACTGATCAATATGGAAGGTTCATGAATTCTCTTTACAGTTTACTGGATGGTTCTTCTGATAATTCAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAGTCATATGTCTTGTTCACGTTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCAAGTGCCACTGATGAGATGGATAACAAACTTCTTCAACTATATGCATATGAGCAATCAAGAAAACCTGGAAGCTTTGCTGATATAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAACATATATCGCATTGAGTGTTCATCTACACCAACCCGATTGTCTATTCAGTTGATGGACTATGGACATGATAAGCCTGAAGTGACTGCTGTGGCAATAGATCCTAATTTTTCAACATATCTGCACAATGATTTCCTATCTGTTGTTCCTGACAGTAAGGAGAGGTCGGGAGTTTTCTTAAAAAGGAATAAACTAAAATGTGGCTGGAGTGATGAATTTTCAAGTCAGGTCATAGATGAAGTACAAGTTATCAATGGTCTGGAGTGTAAGATTTCTTGCAATTCATCCAAGGTTTCATATGTTTTAGATACTGAAGACTCTTTATTTCGAGCAAAAAAGAAAAGGAGAACTTTGCAAACATATCGTGAACAGACAATGTCTTCAAACAATTGTTCAAGCAGATCACAGCGGTTCTGCAAATTGTTTTCCATCAAATGA 4227 0.4029 MSSQLKRPVLSSRGEPSGQPQVMSGGQKLTTNDALSYLKAVREMFQDDKEKYDEFLEVMKDFKAQRIDTAGVIERVKELFKGHKDLILGFNTFLPKGYAITLPSENEPPPLKKPVEFEEAINFVGKIKTRFQGNDRVYKTFLDILNMYRKETKTITVVYQEVSALFQDHADLLEEFTHFLPDTSGAAAAHFASASARNSLRDRNSAMPTVRQTHVEKREKTIALHADRDLGVDHSDPELDRGVMRADKEQRRREREKDRREERDRRERERDDRDYDNDGNREHLSVKRKSGHRAVDAGTEPSHDADEKLDMHHISSASEDKSSLKNMCSPVLAFLEKVKEKLRNPEDYQEFLKCLHIYSREIITRQELLALVGDLLGKYADLMEGFDDFVTQCEKNGFLAGVMNKKSLWNEGHGPKPVKVEDKDRDRDRDDGVKERDRELRERDKSTGIANKDVSIPKVSLSKDKYVGKPINELDLSNCEQCTPSYRLLPKNYPIPIASQRTELGDEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTNKRVEEILDKVNANIIQGDIPIRIEEHLTPLNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLGEIKEVSEKKRKEDDVLLAIAAGNRRPILPNLEFEYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMRIWTTFLEPMLGVPSRRRIAEDTEDAVNAKNDSGKTGTASIPKGDSSPGVGVTVMNPKNSNTNRNGDASVSFQQSNSCKEWQTNGVGGVKGDGCLESDRSAPKNETLGSSTLQGKMPISASIPDEVSRVNKQDHSIEQLVNANVSLSSGMEQSNGRTNINNASGLAATLSRPGFVSSEGGLDLPSSEGGDSARPDTSTNGGVTEVTKVHRCHKESVGHFKSEREEGELSPNGDFEEDNFAVYANAGLEAVHKGKDLNTSQQYQNRHGKQICGEAGGVNDDESDRSPHRSSDDSENASENGDVSGTESADGEECSREEHEEDGDHEHDNKAESEGEGEGMADANDVEGDGASLPYSERFLLTVKPLVKHVRPVLHGKEKNVQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRASNDTSSTDQYGRFMNSLYSLLDGSSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASATDEMDNKLLQLYAYEQSRKPGSFADIVYHENARVLLHDENIYRIECSSTPTRLSIQLMDYGHDKPEVTAVAIDPNFSTYLHNDFLSVVPDSKERSGVFLKRNKLKCGWSDEFSSQVIDEVQVINGLECKISCNSSKVSYVLDTEDSLFRAKKKRRTLQTYREQTMSSNNCSSRSQRFCKLFSIK 1408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02203 1408 ProSiteProfiles PAH domain profile. 320 393 IPR003822 GO:0006355
Trre16g02203 1408 MobiDBLite consensus disorder prediction 792 810 - -
Trre16g02203 1408 PANTHER SIN3B-RELATED 28 1269 IPR039774 GO:0003714
Trre16g02203 1408 MobiDBLite consensus disorder prediction 415 446 - -
Trre16g02203 1408 MobiDBLite consensus disorder prediction 930 944 - -
Trre16g02203 1408 MobiDBLite consensus disorder prediction 1009 1089 - -
Trre16g02203 1408 Pfam C-terminal domain of Sin3a protein 1123 1371 IPR031693 -
Trre16g02203 1408 Gene3D Paired amphipathic helix 33 95 IPR036600 GO:0006355
Trre16g02203 1408 MobiDBLite consensus disorder prediction 212 309 - -
Trre16g02203 1408 MobiDBLite consensus disorder prediction 1048 1076 - -
Trre16g02203 1408 Gene3D Paired amphipathic helix 323 395 IPR036600 GO:0006355
Trre16g02203 1408 ProSiteProfiles PAH domain profile. 113 183 IPR003822 GO:0006355
Trre16g02203 1408 FunFam Paired amphipathic helix SIN3-like protein 112 183 - -
Trre16g02203 1408 MobiDBLite consensus disorder prediction 911 974 - -
Trre16g02203 1408 MobiDBLite consensus disorder prediction 410 446 - -
Trre16g02203 1408 SUPERFAMILY PAH2 domain 109 182 IPR036600 GO:0006355
Trre16g02203 1408 Gene3D Paired amphipathic helix 112 184 IPR036600 GO:0006355
Trre16g02203 1408 SUPERFAMILY PAH2 domain 26 96 IPR036600 GO:0006355
Trre16g02203 1408 MobiDBLite consensus disorder prediction 1017 1035 - -
Trre16g02203 1408 Pfam Sin3 family co-repressor 480 570 IPR013194 -
Trre16g02203 1408 MobiDBLite consensus disorder prediction 1 27 - -
Trre16g02203 1408 Coils Coil 246 266 - -
Trre16g02203 1408 Pfam Paired amphipathic helix repeat 137 180 IPR003822 GO:0006355
Trre16g02203 1408 Pfam Paired amphipathic helix repeat 346 389 IPR003822 GO:0006355
Trre16g02203 1408 Pfam Paired amphipathic helix repeat 50 94 IPR003822 GO:0006355
Trre16g02203 1408 MobiDBLite consensus disorder prediction 197 211 - -
Trre16g02203 1408 MobiDBLite consensus disorder prediction 946 968 - -
Trre16g02203 1408 MobiDBLite consensus disorder prediction 832 857 - -
Trre16g02203 1408 FunFam Paired amphipathic helix protein Sin3 33 95 - -
Trre16g02203 1408 ProSiteProfiles PAH domain profile. 27 97 IPR003822 GO:0006355
Trre16g02203 1408 MobiDBLite consensus disorder prediction 196 309 - -
Trre16g02203 1408 MobiDBLite consensus disorder prediction 842 857 - -
Trre16g02203 1408 SUPERFAMILY PAH2 domain 329 393 IPR036600 GO:0006355
Trre16g02203 1408 Coils Coil 551 571 - -
Trre16g02203 1408 SMART hdac_interact2seq4b 478 578 IPR013194 -
Trre16g02203 1408 MobiDBLite consensus disorder prediction 764 810 - -
Trre16g02203 1408 FunFam Paired amphipathic helix protein SIN3 322 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02203 Trre-Chr16 17890398 17903969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02203 19 109 WRKY Transcription Factor Family AT4G12020 55.319 2.89e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre16g02203 Sin3a_C 1.9e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02203 K11644 - gmx:100781798 2040.77