Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02201 ATGGCTTTCAATGTGATCCTTTTTTTGTGTCTTGTTTTTCATATATTTTTAATACAAACATGTTATTGCAAAAACAATTCTCCTCAAAACATAGAAACTTTGTATCCAAATGAAACTTTAGCTTCACCACCAACAAATCAACCACCAAAGACACAACCATCATTTTCATCACCACCACCACCTCAAGGACTAATCGCGGTATCGAAAAGTAGTTCATCAAATGGTAAGATAGCAAAAGCTGTGGCTGCAACTGCCGCAAGCACTATAGTTATTTGTGGTTTAATCTTCATTTTAGCTAAAAGGTGTTTAAGGAAAAGAAAGAGATCAAGAGAGATAGTAAATAACATTGTTGTTGATGGAGATAGGCAACAAGTTATTGTGCCTAAAGGGAATGTTTTTGAAAAAATTGATGGAAATGTGAGAGGTTTAATTGTTGATGAAGATGGTTTAGATGTGATTTATTGGAGAAAACTTGAAGAGAAGAATTCAAATAAGGATCTTTATAAAGATATCTTGAATAGTCCAAAAAACAAAGAAGAAATTGAAGATAGTCATGAAGAAGAAAATCAAGTGAAAAAATCTAAGTCCATCCAAGAAATTCCTCTTCTTAGAGGAAAATCTTCATCCTCACACTTGAATTTATATCAAGAAGAGAATGATCTATATAGTGTTCCAAGAATTCAATCTCAACCATCCAAAAAAAATGTTGTTCAGAAACAAGATTTTCAATCTCAACCATCCAAAAATGATGTTGTTCATAAACAAGATTTTGAATCTCAACCATCAATTCTACCATCAATTTCAGCAGCTGCAGCACCACCTGCACCTCCTCCTCCAATTCCAGCTAGGAAGAGTCAAGCACCACCACCACCTCCTCCAATGAAGACGAGTACTTCGAATTCATCATCAAAAGCTATCTCTCAAAGCAATCAAAGAAACTCTTCAGGGAAAAGTGTAGAATCCAACAATGATCAAGTGAAATTGAAGCCTTTGCATTGGGATAAAGTGAATACTAATGCTGCTGATCATTCCATGGTTTGGGACAAAGTCGATCGCGGCTCATTCAGGGTTGATCAAAATCTTATGGAAGCACTCTTTGGTTATGTCGCGACCAACCGATTGTCGCCTAAACGAAATACTGAATCAACCAGTCAAAGCAATGATCCCTCAACAAAAATTTTCATTCTTGATCCTAGAAAGTCACAAAACATAGCTATTGTTTTGAAATCTCTAGCCGTCTCACGAGACGAAATTCTTGATGCACTCATTGATGGAAAAGGCCTCAATTCAGATACACTTGAAAAGCTTACAAGAGTTTCACCAACAGAAGAAGAGAAATCACTTATCCTTAACTATAAAGAAGATCCATCAAGACTAGCTGCAGCAGAATCATTCCTATATCACATCCTTAAAGCCGTTCCTTCGGCGTTTAATCGCTTAAACGCGATGCTATTTAGGTTGAACTATGACTCGGAGGTTATGGAAATCAAAGAGTGTTTGCAGACCATTGAATTTGGATGTAAAGAACTTAGAAGTCAAGGAGTCTTTTTGAAGCTTCTAGAAGCAGTGCTTAAGGCCGGAAATCGAATGAACGATGGAACTTCTCGAGGTAATGCTCAAGCTTTTAACTTGAATTCTCTAAGGAAACTCAATGATGTCAAAAGCAACAATGGAAAAACAACATTACTTCACTTTGTTGTTGAAGAAGTAGTCCTTTCAGAAGGAAAACGCGCGGTTCTTAACCGAAATAACAGCCTAAACCGAAATAACGCGACAAATGTTGTTTCAGAAGAAAGAAGAGAAAGGGAATACAAAATGTTAGGATTGTCAATTGTGGGAGGAATAAGTTCTGAATTTTCCAATGTTAGAAGAGCAGCAAATTTGGATTATAAAAGTTTATTTGGTTCAATTTCAGAACTATCTATTAAGCTTAATGAAATTAAAGAACTTGTGTCACAATGTGAGAATGGTGAAAGAGGAAATTTTGTGAAAGAAATGAATTATTTTATTGGAAATGCTGAGAAAGAATTGAAACTAGTGAGAGAGAAACAAACAATTGTGTTGCAGATTCTTAGTAAAACAACACAATATTATGAATGTTCAAAAGAGAAAGAAGAAAATGATCTTCAACTATTTGGTATAGTTAAGGATTTTTTGAGAATGGTTGATCAAGTTTGCATTGAAATTGCACGTGAAATGCAGAAGAAGAATCCTAAAGGAGTGTCTGGAACAAAGTAG 2238 0.3539 MAFNVILFLCLVFHIFLIQTCYCKNNSPQNIETLYPNETLASPPTNQPPKTQPSFSSPPPPQGLIAVSKSSSSNGKIAKAVAATAASTIVICGLIFILAKRCLRKRKRSREIVNNIVVDGDRQQVIVPKGNVFEKIDGNVRGLIVDEDGLDVIYWRKLEEKNSNKDLYKDILNSPKNKEEIEDSHEEENQVKKSKSIQEIPLLRGKSSSSHLNLYQEENDLYSVPRIQSQPSKKNVVQKQDFQSQPSKNDVVHKQDFESQPSILPSISAAAAPPAPPPPIPARKSQAPPPPPPMKTSTSNSSSKAISQSNQRNSSGKSVESNNDQVKLKPLHWDKVNTNAADHSMVWDKVDRGSFRVDQNLMEALFGYVATNRLSPKRNTESTSQSNDPSTKIFILDPRKSQNIAIVLKSLAVSRDEILDALIDGKGLNSDTLEKLTRVSPTEEEKSLILNYKEDPSRLAAAESFLYHILKAVPSAFNRLNAMLFRLNYDSEVMEIKECLQTIEFGCKELRSQGVFLKLLEAVLKAGNRMNDGTSRGNAQAFNLNSLRKLNDVKSNNGKTTLLHFVVEEVVLSEGKRAVLNRNNSLNRNNATNVVSEERREREYKMLGLSIVGGISSEFSNVRRAANLDYKSLFGSISELSIKLNEIKELVSQCENGERGNFVKEMNYFIGNAEKELKLVREKQTIVLQILSKTTQYYECSKEKEENDLQLFGIVKDFLRMVDQVCIEIAREMQKKNPKGVSGTK 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02201 745 MobiDBLite consensus disorder prediction 34 63 - -
Trre16g02201 745 MobiDBLite consensus disorder prediction 270 296 - -
Trre16g02201 745 MobiDBLite consensus disorder prediction 178 194 - -
Trre16g02201 745 SUPERFAMILY Formin homology 2 domain (FH2 domain) 274 735 - -
Trre16g02201 745 Gene3D Formin, FH2 domain 338 740 IPR042201 -
Trre16g02201 745 Pfam Formin Homology 2 Domain 322 723 IPR015425 -
Trre16g02201 745 SMART it6_source 318 737 IPR015425 -
Trre16g02201 745 PANTHER FORMIN-RELATED 16 732 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trre16g02201 745 MobiDBLite consensus disorder prediction 178 198 - -
Trre16g02201 745 MobiDBLite consensus disorder prediction 42 60 - -
Trre16g02201 745 MobiDBLite consensus disorder prediction 230 331 - -
Trre16g02201 745 MobiDBLite consensus disorder prediction 230 250 - -
Trre16g02201 745 MobiDBLite consensus disorder prediction 297 325 - -
Trre16g02201 745 ProSiteProfiles Formin homology-2 (FH2) domain profile. 318 745 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02201 Trre-Chr16 17862599 17865014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02201 9 736 FH2 protein (formin) Gene Family AT1G70140 42.428 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02201 - - gmx:100783219 790.801