Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02188 ATGAATGACGACGAGCCATTACCGGCAATCCTCATGTCGCTGTCTTGTATCTCCGATTGCGACCTCCTCTGCGGCGAGGAAAACTCCGGAGTAGATTCAACGGAATACTCCTCCGACCTCGATTCATCATCGCCGCCGTCGTTGTCATTATTCGCAGAGGAGGAAGAGGAAGAGTCCATTGCTGTTTTCATTGAACACGAGCATAACTTCGTTACTGGATTCGATTACTTTGCAAGATTCCAATCTCACTCTCTTGTTGCCAACGCCAGAGAAGAATCCATTGCATGGATACTCAAGGTACATGCGTACTATGGATTTCAGCCGTTGACTGCGTACCTTTCCGTTAACTATATGGATCGGTTTTTGGACTCTCGACCCTTACCGGAATCAAAGGAATGGCCTCTGCAACTTTTATCTGTTGCATGTTTGTCTTTAGCAGCTAAGATGGAGGAACCCCTGGTTCCTTCTCTCTTGGACCTTCAGATCGAAGGTACCAAATACATATTTCAACCGAGAACGATTCTTAGAATGGAGCTACTTGTTCTGACTATTTTGGATTGGAGGCTAAGATCAGTCACCCCACTTAGCTTCCTTGGTTTCTTTGCGTGCAAGCTAGATCCAACTGGAACTTTCACTCGCTTCCTTATTTCACGTGCTACAGAAATCATCTTGTCTAATATCCAAGATGCTGGCTTTCTTGCTTATTGGCCATCATGCATTGCTGCAGCTTCCATACTCTCCGCAGCTAATGAAATTCCTAATTGGTCTTACGTTAAGCCTGAGCATGCTGAATCATGGTGTGAAGGATTAAGAAAAGAAAAAATTATAGGGTGCTATGAAATGATGCAAGAAATTATGGTAAGCAATAACAGAAGAAATCCCCCTAAAGTATTGCCACAGTTGCGAGTGACAACTCGAACTCAAAGGTGGTCCAATGTCTCATCATCATCCCCATCTTCGTCATCATCTCCATCTTCCTCATCATCACCCTCTTTCTCATTGTCTTATAAAAAAAGGAAATTAAATAACTGTTTCTGGTTAGATGATGACAAAGGAAACTCGGAGTGA 1068 0.4345 MNDDEPLPAILMSLSCISDCDLLCGEENSGVDSTEYSSDLDSSSPPSLSLFAEEEEEESIAVFIEHEHNFVTGFDYFARFQSHSLVANAREESIAWILKVHAYYGFQPLTAYLSVNYMDRFLDSRPLPESKEWPLQLLSVACLSLAAKMEEPLVPSLLDLQIEGTKYIFQPRTILRMELLVLTILDWRLRSVTPLSFLGFFACKLDPTGTFTRFLISRATEIILSNIQDAGFLAYWPSCIAAASILSAANEIPNWSYVKPEHAESWCEGLRKEKIIGCYEMMQEIMVSNNRRNPPKVLPQLRVTTRTQRWSNVSSSSPSSSSSPSSSSSPSFSLSYKKRKLNNCFWLDDDKGNSE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02188 355 MobiDBLite consensus disorder prediction 308 335 - -
Trre16g02188 355 CDD CYCLIN_AtCycD-like_rpt1 89 187 - -
Trre16g02188 355 FunFam D2/4-type cyclin 73 190 - -
Trre16g02188 355 PANTHER CYCLINS 53 290 IPR039361 -
Trre16g02188 355 SUPERFAMILY Cyclin-like 173 289 IPR036915 -
Trre16g02188 355 Gene3D - 73 190 - -
Trre16g02188 355 CDD CYCLIN_AtCycD-like_rpt2 192 282 - -
Trre16g02188 355 SMART cyclin_7 95 183 IPR013763 -
Trre16g02188 355 Pfam Cyclin, C-terminal domain 192 315 IPR004367 -
Trre16g02188 355 Pfam Cyclin, N-terminal domain 60 189 IPR006671 -
Trre16g02188 355 Gene3D - 64 279 - -
Trre16g02188 355 SMART Cyclin_C_2 192 319 IPR004367 -
Trre16g02188 355 ProSitePatterns Cyclins signature. 90 121 IPR006671 -
Trre16g02188 355 SUPERFAMILY Cyclin-like 53 189 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02188 Trre-Chr16 17637307 17640302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02188 12 354 Core Cell Cycle Gene Families AT1G70210 56.232 7.05e-126 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02188 K18810 - gmx:100778578 466.848