Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02176 ATGGATGCTAAGAGTGGTCTTTTTGCAGGGTCTCTTAATAGCAATGAACTTGTGGTAATTCAAGGACACAGTGAGCCTAAGACAGTGAAGAACTTGGATGGCCAAGTATGTGAGATATGTGGCGATTCTGTAGGGCGTACGGTAGATGGAGACTTATTTATAGCTTGTGAAGAGTGTGGCTTCCCTGTCTGCAGGCCATGCTATGAGTATGAAAGAAGGGAGGGAACTCAAGTTTGCCCTCAGTGTCATACAAGATACAAGCGTATCAAAGGAAGTCCAAGAGTTGGGGGAGATGAAGATGAAGAAGATGTGGATGACATCGAATACGAATTTAAAATGGAAGAGGAAAAGTACAAGCTTAAACATGAAGAAAATATGAGGAGCAGAGATGATGATGACGACGATGATGAGAATACTAAATATGGGGAGTTGCACTTATCTTCTCACAGTGGTGCAAAATTAGATAACAAGGAGAAAACAGATGATTGGAAGTTGCAACAAGGCAATCTGTTGATTGAAACTGATGCAGTTGATCCTGAAAAAGCCATGAAAGATGAAACTAGACAGCCACTTTCAAGGAAAGTGGCAATACCTTCAGGAAAACTCAGTCCTTATAGAATGATGGTTGTGACTAGATTGATCCTTCTAATACTCTTCTTTGAGTATAGAATCTTCCATCCAGTACCTGAAGCAATTGGACTTTGGTTCATATCTGTATCATGTGAAATCTGGCTTGCATTGTCATGGATAGTTGATCAGATTCCCAAATGGTTTCCCATTGATCGCGAGACATACCTTGATCGCCTTTCAGTCAGGTTTGAACCGGAAAACAAGCCGAACATGCTATCTCCTATTGATATCTTTGTAACAACTGCGGATCCAATCAAGGAACCGCCTCTTGTTACAGCCAATACTATTCTTTCAATTTTGGCATTAGATTATCCTGCGCAAAAAATCTCATGCTACGTTTCTGATGACGGTGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAGTTCGCGCAAAAATGGGTACCTTTTTGTAAACAATTCTCTGTAGAGCCTCGAGCACCAGAGAAGTATTTCTCCGAGAAGATAGATTTTCTGAAAGATAAGATTCAGACCTCATATGTAAAAGAACGCCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGAATCAATGCACTTGTGGCTAAGTCCATTAGAGTTCCCTCCGAAGGATGGAGTATGAAAGATGAGACACCATGGCCAGGAAACAATGCAAAAGATCATCCAAGTATGATACAAATCCTTCTTGGTCATAATGGAGGAGACAATAAAGATAACGAACTTCCGTCTCTTGTCTACATCTCTAGAGAAAAAAGGCCTGCATTTCAGCATCACACAAAAGCCGGCGCAATGAATGCCTTGCTTCGCGTATCGGCTGTGTTGAGTAACGCTCCTTTTGTGCTCAACTTGGATTGTAATCATTATGTCAATAACAGCAAAGTTGTGAGAGAAGCTATGTGCTTCTTTATGGACATTCAACTTGGGAATAGCATTGCCTTTGTTCAGTTTCCTCTAAGATTTGATAGTCTTGATAGAAACGATCGATATGCCAACAAAAACACTATTTTGTTTGATATTAACTTGAGGTGTTTAGATGGACTTCAAGGACCTGTTTATATTGGATCAGGTTGTATATTCAGAAGGAAAGCATTAAATGGCTTTGATCCTCCCAAGGCGGCAAAACGCTCTCAAATCGTACAAGTACACTCAAAACAGGATGAAAATGAAGAGGATGCAAGCATTATAGAAGCAACAGATGAAGACAAGCAACTATTGCAATCAGATATGAATACTGAAAATAAATTTGGAAAATCTACACTCTTCATGAATTCTTCATTAACAGAAGAAGGTGGTGTAGATCCTTCTTCAACTCAAGAAGCCTTACTTAAAGAAGCGATTCATGTCATGAGTTGTAGCTACGAAGATAGAACACTTTGGGGATACGAGGTTGGTATGAGCTATGGATCTATAGCAGCAGATACTCTAACAAGTTTAAAGATGCATACTCGTGGTTGGAGATCGGTATACTGCATGCCAAAGAAGGCTGCTTTTCGAGGAACAGCACCGATCAATCTTACAGAAAGACTTAACCAAGTACTTAGATGGGCTGTAGGATCACTTGAAATCCTATTCAGCCGACACTGCCCGTTATGGTATGGTTTTAAGGAAGGAAGACTGAAGGTTCTTCAAAGGATTGCCTATATTAACAGCACTGTCTACCCTTTTAGTGCATTACCTCTCACAATCTATTGTATCATTCCTGCCATCTGCTTGCTCACTGACAAATTCATCACACCATCGGTAGGAACTTTTGCAAGTCTAGTATTCATTTCTCTATTCATCTCAATCTTTGCTTCTGCCATTCTTGAACTAAGATGGAGTGGAGTTAGTCTTGAGGAATGGTGGAGAAATCAACAATTTTGGGTGATTGGAAGTATATCAGCACATTTCTTTGCAATAGTACAAAGCCTAATGGGAGGATTCATTGGTAAAATCAATGCTCACTTCAACATTGTATCGAAGGCACCGGACGACGATGGACAGTTTAACGAATTATACACCATTAGATGGACAGTACTATTAATACCTCCAACAACAGTGACAATAATAAACCTTATTGGTATTGTTGCTGGTTTCACAGATGCTATAAATAGTGGTGAACATGAATGGGGAATATTGATTGGGAAACTGTTTTTTGCTTCATGGGTTATTGCTCATCTTTATCCTTTCCTTAAAGGACTAATGGGAAGACAGAATAGAACACCAACACTTATTGTTATTTGGTCTGTTCTTTTGGCTTCTATTTTCTCTTTGGTTTGGGTAAGAATTGACCCTTTTGTGTTGAAAACTAAAGGGCCTGATGTTAAACAATGTGGAATTAGTTGTTGA 2949 0.3957 MDAKSGLFAGSLNSNELVVIQGHSEPKTVKNLDGQVCEICGDSVGRTVDGDLFIACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVGGDEDEEDVDDIEYEFKMEEEKYKLKHEENMRSRDDDDDDDENTKYGELHLSSHSGAKLDNKEKTDDWKLQQGNLLIETDAVDPEKAMKDETRQPLSRKVAIPSGKLSPYRMMVVTRLILLILFFEYRIFHPVPEAIGLWFISVSCEIWLALSWIVDQIPKWFPIDRETYLDRLSVRFEPENKPNMLSPIDIFVTTADPIKEPPLVTANTILSILALDYPAQKISCYVSDDGASMLTFEALQETAEFAQKWVPFCKQFSVEPRAPEKYFSEKIDFLKDKIQTSYVKERRTMKREYEEFKVRINALVAKSIRVPSEGWSMKDETPWPGNNAKDHPSMIQILLGHNGGDNKDNELPSLVYISREKRPAFQHHTKAGAMNALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNSIAFVQFPLRFDSLDRNDRYANKNTILFDINLRCLDGLQGPVYIGSGCIFRRKALNGFDPPKAAKRSQIVQVHSKQDENEEDASIIEATDEDKQLLQSDMNTENKFGKSTLFMNSSLTEEGGVDPSSTQEALLKEAIHVMSCSYEDRTLWGYEVGMSYGSIAADTLTSLKMHTRGWRSVYCMPKKAAFRGTAPINLTERLNQVLRWAVGSLEILFSRHCPLWYGFKEGRLKVLQRIAYINSTVYPFSALPLTIYCIIPAICLLTDKFITPSVGTFASLVFISLFISIFASAILELRWSGVSLEEWWRNQQFWVIGSISAHFFAIVQSLMGGFIGKINAHFNIVSKAPDDDGQFNELYTIRWTVLLIPPTTVTIINLIGIVAGFTDAINSGEHEWGILIGKLFFASWVIAHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRIDPFVLKTKGPDVKQCGISC 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02176 982 FunFam Cellulose synthase 19 110 - -
Trre16g02176 982 SUPERFAMILY Nucleotide-diphospho-sugar transferases 298 758 IPR029044 -
Trre16g02176 982 Coils Coil 383 403 - -
Trre16g02176 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Trre16g02176 982 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 427 577 IPR029044 -
Trre16g02176 982 CDD mRING-HC-C4C4_CesA 35 85 - -
Trre16g02176 982 SUPERFAMILY RING/U-box 22 107 - -
Trre16g02176 982 MobiDBLite consensus disorder prediction 122 145 - -
Trre16g02176 982 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Trre16g02176 982 Pfam Cellulose synthase 285 976 IPR005150 GO:0016020|GO:0016760|GO:0030244
Trre16g02176 982 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Trre16g02176 982 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 187 949 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02176 Trre-Chr16 17553732 17559260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02176 1 982 Cell Wall Biosynthesis AT5G17420 64.078 0.0 1373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02176 K10999 - gmx:100777270 1611.66