Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02175 ATGGCTAACGAACGTAAAACTGCACAATTGACAATGTTCTATGCTGGAACTGTTGTTGTGGTGGATGGTTTTCCTGCTGACAAATTCGATGAGCTAAAGTCATTTGCCGAAAATCTGACTCAGCCTGCAATTGTTCCTAATATGAGCCCTCAATCATCAGCATCCAGTTCCACACAGATTACTCGAGAACCAACAATAATTGATCGCTTTAAAGAACAAACAACAATTGGTTCCAATAGAAGAGGTTCACTTCTTCAATTCTTTCGACGGAGGAATGATCGGTAG 285 0.407 MANERKTAQLTMFYAGTVVVVDGFPADKFDELKSFAENLTQPAIVPNMSPQSSASSSTQITREPTIIDRFKEQTTIGSNRRGSLLQFFRRRNDR 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02175 94 ProSiteProfiles Tify domain profile. 3 38 IPR010399 -
Trre16g02175 94 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 5 94 IPR040390 -
Trre16g02175 94 SMART tify_2 3 38 IPR010399 -
Trre16g02175 94 Pfam tify domain 6 30 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02175 Trre-Chr16 17544897 17545274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02175 1 94 Tify Gene Family AT1G72450 28.182 1.32e-07 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre16g02175 tify 9.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02175 - K13464 dct:110113635 44.669