Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02171 ATGGATGAATTGGGAAGTAGTAGCTGTGATTGGAGTAGAGAGCAAGATATAGCGTTTGAAAATGCGTTGGCAAATTTTCCCCACGGATGGGAGCGAGTTGTGGCCAATGTAACGGGGAAAAGTTTAAACGAGATTAAGCGTCATTATGTGGATTTGATTGATGATGTTAACCACATTGAATCTGGTTATGTGCCTCTGCCAGCTTATAATAAAATTCAATCTGTCAAAAAGAGAACTGAGACTTCAAGATCTGTTCAAGAACGGCGAAAGGGTATTCCTTGGACAGAAGCTGAACATAGGTTATTTCTTCAAGGCTTGGAGAACCATGGATGGGGTGACTGGCGAAGTATATCAAGGCACTGTGTGGTAACAAGAACACCTACACAAGTAGCAAGCCATGCTCAGAAATATAAAATTCGACAGAATTCAAAGGAGAAGAAGAAAGAAAGAAAGCGATCCAGCATACATGATGTCACCCATGTAAAAAATGATGACATTTCAGCACCTGAAAGATCAATTATCGGTCAAGCAAGCAGTTCTGCAGCAAGTTCTTCTGGACAATCAGACGAACAAGCTCTTCCATCCCCGCCTCCTGGAATTTATGCTGCTCCAAGGATCGAGCAACATATTGGAGGATCTCTTGTATCTGCAGTTGGCACTCCAGTGAATCTTACTGCTGCTGGACAATCACCCGAACATGCTCCTCCAACCCCACCTGCCGGAATTTATGCTGCTCCTAGGATCGAGCACCCTATTGGAGGACATCTTGTATCTGCAGTTGGCACTCCAGTGAATCTTTCTGCTTCTGGACAAGCCGAGCAAGCTCCTCTAGCCCCACCTGCTGGAATTTATGGTGCTCCTAGGATCGAGCACTCTATTGGAGGACCCCTTGTATCTGCAGTTGGCACTCCAGTGAATATTACTGCTGCTGGACACATGGCTTATGAACTTGGACCGGATTCTGTGAAAGTTATGCCAGGAGACATGGCTTATGAACTTGGAACTCCAATGAACTTGGGTCCTATGACATATCCCATGCAATATACATATGCTCATTCATAA 1062 0.4463 MDELGSSSCDWSREQDIAFENALANFPHGWERVVANVTGKSLNEIKRHYVDLIDDVNHIESGYVPLPAYNKIQSVKKRTETSRSVQERRKGIPWTEAEHRLFLQGLENHGWGDWRSISRHCVVTRTPTQVASHAQKYKIRQNSKEKKKERKRSSIHDVTHVKNDDISAPERSIIGQASSSAASSSGQSDEQALPSPPPGIYAAPRIEQHIGGSLVSAVGTPVNLTAAGQSPEHAPPTPPAGIYAAPRIEHPIGGHLVSAVGTPVNLSASGQAEQAPLAPPAGIYGAPRIEHSIGGPLVSAVGTPVNITAAGHMAYELGPDSVKVMPGDMAYELGTPMNLGPMTYPMQYTYAHS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02171 353 Gene3D - 92 143 - -
Trre16g02171 353 MobiDBLite consensus disorder prediction 172 192 - -
Trre16g02171 353 FunFam transcription factor MYB1R1 92 143 - -
Trre16g02171 353 CDD SANT 93 138 IPR001005 -
Trre16g02171 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Trre16g02171 353 Gene3D - 5 66 - -
Trre16g02171 353 SUPERFAMILY Homeodomain-like 87 143 IPR009057 -
Trre16g02171 353 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Trre16g02171 353 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Trre16g02171 353 MobiDBLite consensus disorder prediction 148 167 - -
Trre16g02171 353 CDD SANT 11 49 IPR001005 -
Trre16g02171 353 FunFam Transcription factor SRM1 4 66 - -
Trre16g02171 353 SMART sant 90 140 IPR001005 -
Trre16g02171 353 SMART sant 7 55 IPR001005 -
Trre16g02171 353 PANTHER TRANSCRIPTION FACTOR KUA1 7 235 - -
Trre16g02171 353 ProSiteProfiles SANT domain profile. 94 142 IPR017884 -
Trre16g02171 353 SUPERFAMILY Homeodomain-like 10 59 IPR009057 -
Trre16g02171 353 MobiDBLite consensus disorder prediction 132 203 - -
Trre16g02171 353 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02171 Trre-Chr16 17528746 17531675 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g02171 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02171 - - tpra:123890573 525.398