Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02166 ATGAACACTTCAGTTATTTTCATCGTAGTAATTTTAGCTATTGTGTTTTTCATTTCTGGTGCCCTCCAACTGTTTGTTAGATTTCTCATAAGAAAAAGGTCATCTTTATCAATTTCTCAATCCAATAACAACAACCCTCAAATGTCTGAACCTGATCCTTACCAAAGACAGTTACAACAACTCTTCAATCTTCATGATTCAGGTTTAGATCAAGCTTTCATTGATGCTTTACCAGTTTTCCTTTACAAAGAGATAATAGGTTTGAAAGAACCATTTGATTGTGCTGTTTGTCTTTGTCAATTCATAGAACAAGACATGTTGAGATTGTTGCCTCTTTGTAATCATGCTTTTCACATTGATTGCATTGATACATGGCTTTTGTCTAATTCAACTTGTCCTCTTTGTAGAGGGAGTCTTTATGAACATGGGTTTGGCTTTGAAAATCCTGTTTATGACTTTGAGAGTTTAAGGGAAGAAGATAGGGTTTTTGATAGTGTTGTTGGTGAAGCTAATTCTGTTAACAAACATGCAGAAAATCATATAATGAGTGGTAAAAGGGTTTTTTCTGTTAGGCTTGGAAAATTTAAAAGCTCAAATAATGGAGAAGGGGGTGTGGAAAGAAATGTAGGAGAGAGTAGTACTAGTACAAATATTATTGATGATGTTAGGAGATGTTATTCAATGGGTTCTTACCAATATGTTGTTGCTGATTCAGATTTGGTAGTGGCTTTGTGTCCTAAGAGAGGTGAGGGAGGTAGCAATAGTGCTAGTATGAGAAAATTGAAAGGTGGGTTTTCTCAAAATGGGAATTGTTCCATTGATGGTGGGGATATTGAAGGGAAGAAAATCAATGTTGCTAGGAAAGGTGAAAGCTTTTCTATTTCAAAGATATGGTTATGGTCAAGGAAGGAGAAGGTATCAAGTTCATCACAATCTCATTTGGTTAATTCTAATGTTACTTCAACTTTGCCATGGATGAATAGAGAGTTCAAGGAAGCAACTTAG 1005 0.3522 MNTSVIFIVVILAIVFFISGALQLFVRFLIRKRSSLSISQSNNNNPQMSEPDPYQRQLQQLFNLHDSGLDQAFIDALPVFLYKEIIGLKEPFDCAVCLCQFIEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEHGFGFENPVYDFESLREEDRVFDSVVGEANSVNKHAENHIMSGKRVFSVRLGKFKSSNNGEGGVERNVGESSTSTNIIDDVRRCYSMGSYQYVVADSDLVVALCPKRGEGGSNSASMRKLKGGFSQNGNCSIDGGDIEGKKINVARKGESFSISKIWLWSRKEKVSSSSQSHLVNSNVTSTLPWMNREFKEAT 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02166 334 SUPERFAMILY RING/U-box 73 142 - -
Trre16g02166 334 FunFam RING-H2 finger protein ATL46 56 141 - -
Trre16g02166 334 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Trre16g02166 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 141 IPR013083 -
Trre16g02166 334 SMART ring_2 94 135 IPR001841 -
Trre16g02166 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 298 - -
Trre16g02166 334 CDD RING-H2_EL5-like 93 136 - -
Trre16g02166 334 Pfam Ring finger domain 93 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02166 Trre-Chr16 17482584 17483588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02166 55 310 C3H Transcription Factor Family AT2G18650 43.310 5.39e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02166 - - gmx:100818135 440.654