Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02154 ATGGCTTCATCATTAATCAAAATCTCAAGGCTCGTCTCTCGTTCAATTTCCTCTGCTTCTTCTACATCCTTGTTGTCGAGAGGTGGGAATGGTTATCTTGGTGGATTGCTCTCGAAATATAGCACTGCTGCTGCCTTTGATGAACAAACAATTAAACCATCAGTGCAAGTAGAACACACACAACTCTTAATTGATGGCAAATTTGTAGATGCTGCAGCTGGTAAAACATTTCCAACATTGGATCCAAGGACCGGGGAAGTGATTGCTCATGTTGCTGAGGGTCACTCTGAAGATGTTGATAGAGCTGTTAAAGCTGCACGCAAAGCATTTGATCTAGGGCCGTGGCCTAAGTTGCCAGCCTATGAAAGGCAAAAGATATTGTTGCGTGCTGCTGATCTGATTGAAAAGCATAATGATGAAATTGCAGCACTTGAGACTTGGGATAATGGGAAGCCATACGAACAATCTGCTCAAATTGAAATTCCAATGCTGGTTCGCCTATTTCGTTACTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAGTTCCTGCTGATGGACAGTATCATGTGCAGACATTGCACGAACCAATCGGTGTTGCTGGTCAGATCATTCCATGGAACTTCCCTCTTCTCATGTTTGCTTGGAAGGTGGGACCTGCATTAGCATGCGGCAACACTGTTGTTCTGAAAACCGCTGAGCAGACACCATTGTCTGCTTTGTATGTGGCAAAACTATTTCATGAGGCTGGACTTCCTCCTGGTGTGTTGAATATTGTGTCTGGCTTCGGTCCGACTGCCGGTGCTGCTCTTGCTAGTCACATGGATGTAGATAAGCTTGCATTTACTGGCTCGACCGATACCGGAAAAGTTGTTCTTCAACTTGCAGCTAAAAGCAATCTTAAACCTGTAACTTTGGAGCTTGGTGGGAAATCTCCGTTTATTGTTTGTGAAGATGCTGATATAGATGAAGCTGTTGAGCTAGCTCACTTTGCCTTATTCTTCAACCAGGGACAATGTTGTTGTGCTGGGTCTCGAACATTTGTACATGAACGTGTGCATGATGAGTTTGTCGAGAAAGCAAAGGCCCGCGCTTTGAAACGTGCCGTTGGCGATCCATTCAAGTCAGGAACAGAGCAAGGTCCTCAGATTGATTCAAAGCAATTTGAGAAAATACTGAAGTATATTAGATCTGGTGTTGAAACTGGTGCTAAACTTGAAACTGGAGGAGAAAGGCTTGGCAGCAAGGGATTCTATATTCAGCCTACTGTCTTCTCAAATGTTCAGGATAATATGCTGATTGCAAAGGAAGAGATATTTGGTCCAGTGCAATCCATATTTAAATTCAAGGACCTTGATGAGGTAATTCAAAGAGCAAACAATACAAGGTATGGTCTTGCAGCAGGGGTCTTCACAAAGAACATAGACACTGCAAATACTCTGACTAGAGCATTGAAAGTTGGAACAGTTTGGGTAAATTGCTTTGATACATTTGATGCTGCAATACCTTTTGGTGGTTATAAGATGAGTGGACAAGGCAGAGAAAAAGGAGAATACAGTCTTAAGAACTACTTGCAAGTGAAGGCTGTTGTTACTCCCTTGAAGAATCCAGCATGGCTTTGA 1623 0.4313 MASSLIKISRLVSRSISSASSTSLLSRGGNGYLGGLLSKYSTAAAFDEQTIKPSVQVEHTQLLIDGKFVDAAAGKTFPTLDPRTGEVIAHVAEGHSEDVDRAVKAARKAFDLGPWPKLPAYERQKILLRAADLIEKHNDEIAALETWDNGKPYEQSAQIEIPMLVRLFRYYAGWADKIHGLTVPADGQYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKTAEQTPLSALYVAKLFHEAGLPPGVLNIVSGFGPTAGAALASHMDVDKLAFTGSTDTGKVVLQLAAKSNLKPVTLELGGKSPFIVCEDADIDEAVELAHFALFFNQGQCCCAGSRTFVHERVHDEFVEKAKARALKRAVGDPFKSGTEQGPQIDSKQFEKILKYIRSGVETGAKLETGGERLGSKGFYIQPTVFSNVQDNMLIAKEEIFGPVQSIFKFKDLDEVIQRANNTRYGLAAGVFTKNIDTANTLTRALKVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02154 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 312 501 IPR016163 GO:0016620
Trre16g02154 540 Pfam Aldehyde dehydrogenase family 69 530 IPR015590 GO:0016491
Trre16g02154 540 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 45 530 - -
Trre16g02154 540 SUPERFAMILY ALDH-like 54 534 IPR016161 GO:0016491
Trre16g02154 540 FunFam Mitochondrial aldehyde dehydrogenase 2 312 501 - -
Trre16g02154 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 74 530 IPR016162 GO:0016491
Trre16g02154 540 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 334 345 IPR016160 GO:0016491
Trre16g02154 540 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 306 313 IPR029510 GO:0016491
Trre16g02154 540 CDD ALDH_F2BC 57 532 - -
Trre16g02154 540 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 64 327 - -
Trre16g02154 540 FunFam Aldehyde dehydrogenase, putative 502 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02154 Trre-Chr16 17353324 17357600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02154 7 540 Aldehyde Dehydrogenase Gene Family AT3G48000 77.903 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02154 K00128 - gmx:100811891 954.51