Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02126 ATGAGCGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCCGATATATATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTGCAATACTATTCAGTGATTGTGTCATGACTGCGTTAAGAGAGAAAACAGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGATGTTGATACTATATTGGTAATGGAGGGTGGAAAAGTTATTCAATCAGGTAGTTATGAGAATCTCCTAACAGCTGGAACAGCCTTTGAACTACTTGTTAGTGCTCATAAAGACTCAATTACTAACTTAAATCAAGTTAATGAAAATATAAAAGGTTCTGAAAATGAGGTTTTGACTAAAAATCAAAGTGAGGGAGAGATTGCTAGTATGAAGGGACCAATTGGTGCACAGCTTACACAAGAGGAAGAAAAAGTGATTGATTGCATCAACTTTTTCGCTTGCTATAGCCATTGA 486 0.3745 MSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFSDCVMTALREKTVILVTHQVEFLSDVDTILVMEGGKVIQSGSYENLLTAGTAFELLVSAHKDSITNLNQVNENIKGSENEVLTKNQSEGEIASMKGPIGAQLTQEEEKVIDCINFFACYSH 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02126 161 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 149 - -
Trre16g02126 161 Gene3D - 1 125 IPR027417 -
Trre16g02126 161 Pfam ABC transporter 1 28 IPR003439 GO:0005524
Trre16g02126 161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 90 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02126 Trre-Chr16 17165941 17166789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02126 1 87 Calmodulin-binding Proteins AT2G36910 39.080 8.18e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02126 - - pvu:PHAVU_010G1404000 228.794