Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02125 ATGGTTGCATCAATATTCATTCAGCAATATTATCAAGCCACTGCAACTCAACTAATACGAATCAATGGAACCACCAAAGCTCCAGTTATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTTAGGGCATTCAACATGGTAGATAGATTTTTCAAAAACTACTTAAAACTTGTGGACACAGATGCTTCATTGTTCTTTCATTCTAATGTGGCAATGGAATGGGTGGTTTTAAGGATTGAAGCACTTCAAAATTTGACTGTCATCACTTTAGCTTTGTTGCTTATTCTACTACCACAGGGATATGTATCCTCAAGCCTTGTTGGACTGTCTCTTTCCTATCCTTTTACCTTGATGGGAAACCAAATAAATTGGACTAGATGGTTTTCCAATCTATCTAACTATATTATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCAGCTGAGCCTCCTGCTATTGTGAATAACAACCGACCTCCATCTTCATGGCCCTCCAAGGGCAAGATTGACCGTCAAGGTTTGGAGATTAGATATCGTCCTAATGCTCCATTAGTCCTTAAGGGAATCACTTGTACATTTAAAGAAGGAAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTTATTAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAGAGGTGATATTCTCATTGATGGTATGAACATATGTTCAATGGGGTTGAAGGATTTGAGAATGAGGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGAAGCATTAGGACAAACCTGGATCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTGTGGAAAAATGTCAGCTTAAGGAAACAATCAGCAAGCTACCAAGTCTCCTGGACTCTTCAGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAACGCCAAATATGA 951 0.3985 MVASIFIQQYYQATATQLIRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRFFKNYLKLVDTDASLFFHSNVAMEWVVLRIEALQNLTVITLALLLILLPQGYVSSSLVGLSLSYPFTLMGNQINWTRWFSNLSNYIISVERIKQFIHIPAEPPAIVNNNRPPSSWPSKGKIDRQGLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGMNICSMGLKDLRMRLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQI 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02125 316 Gene3D ABC transporter type 1, transmembrane domain 1 153 IPR036640 GO:0005524|GO:0016020
Trre16g02125 316 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 115 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g02125 316 Pfam ABC transporter 189 315 IPR003439 GO:0005524
Trre16g02125 316 SUPERFAMILY ABC transporter transmembrane region 2 154 IPR036640 GO:0005524|GO:0016020
Trre16g02125 316 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 315 - -
Trre16g02125 316 Gene3D - 155 316 IPR027417 -
Trre16g02125 316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 315 IPR027417 -
Trre16g02125 316 FunFam ATP binding cassette subfamily C member 11 157 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02125 Trre-Chr16 17163539 17165678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02125 170 315 Calmodulin-binding Proteins AT2G36910 32.667 5.78e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02125 - - gmx:100784827 508.064