Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02124 ATGAGCTGCAATACCTTGACAGCAGGTAAAATATTTTGGACTAGATGGTTTTCCAACTTATCAAACTATATTATATCTGTTGAAAGAATCAAACAATTCATTCACATACCAGCTGAGCTTCCTGCTATTGTGGATGATAACCGACCTCCATCTTCATGGCCGTCCAAGGGCAAAATTGATCTTCAAGGCTTAGAGATTCGATATCGCCCTAATGCTCCGTTAGTCCTCAAGGGAATCACTTGTACATTTAAAGAATTGTTGGAAGGACTGGAAGTGGAAAAAAACCAACTCTTGGATCCTCTAGGCCTGTACTCAGATGATGAAATTTGGAAGGCTGTGGAGAAATGTCAGCTTAAGGAAACAATCAGCAATCTACCAAGTCTCTTGGACTCCTCAGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAACGCCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTTGTTTTGGATGAAGCTACTGCATCCATTGACTCTGCCACAGATGCCATTCTACAAAGAGTGATTAGACAAGAATTTGCAGAATGCACAGTTATAATTGTGGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTTTTATCCTATGGGAAATTGGTGGAATATGATGAGCCTTCAAAGCTAATGGACACAAATTCTTCATTTTCTAAGCTGGTAGCTGAATATTGGTCCAGTTGCAGGAAGAATTCCTCCACAAATATTAGCAGCCAGCAGCAATGA 768 0.4023 MSCNTLTAGKIFWTRWFSNLSNYIISVERIKQFIHIPAELPAIVDDNRPPSSWPSKGKIDLQGLEIRYRPNAPLVLKGITCTFKELLEGLEVEKNQLLDPLGLYSDDEIWKAVEKCQLKETISNLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFAECTVIIVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMDTNSSFSKLVAEYWSSCRKNSSTNISSQQQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02124 255 Pfam ABC transporter 53 168 IPR003439 GO:0005524
Trre16g02124 255 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 13 85 - -
Trre16g02124 255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 236 IPR027417 -
Trre16g02124 255 Gene3D - 53 239 IPR027417 -
Trre16g02124 255 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 6 237 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02124 Trre-Chr16 17160345 17162004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02124 108 235 Calmodulin-binding Proteins AT2G36910 32.308 3.33e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02124 - - pvu:PHAVU_010G1404000 396.741