Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02123 ATGTCACTCTCCACCACAACTTCTCAATTCACCATTCTTCCTTCAATTTCTTCAACTTCATCACTTTCTCATAGATTTTCCTTCACTTTCCCACAAAAAAGAATCCAAAAAACTTGTCTCACTACTCTTTTCTCTTCTTCATCAAGCTCTGCTGCTAGATTCTTGGTGAAGTCTCAGACTTCTAGTGTATCTTCTTCTGAGGCTGTGAAAGTGACTTCTGTTCCTTCTGAAATGAAGGCTTGGGTTTATGGAGAATATGGTGGTGTTGATGTTTTGAAATTTGATTCCAATGTTGCTGTTCCTGATGTTAAGGAAGATCAGGTTCTTGTTAAGGTTGTTGCTGCTGCTCTTAATCCTGTTGATGGTAAAAGAAGGCAGGGAAAATTTAAGGCTACTGATTCTCCTCTTCCGACTGTTCCTGGCTATGATGTTGCTGGGATTGTAGTAAAAGTTGGAAGTGAAGTAAAGGAGTTCAAAGTGGGTGATGAAGTGTATGGTGATGTAAATGAGAAAGCACTTGAAGGGCCTAAACAGTTTGGTTCTCTAGCTGAATACACAGCTGTTGAGGAGAAATTGTTGGCACTAAAACCTAAGAATTTGGACTTTGTTCAAGCTGCTTCTCTTCCTCTTGCAATTGAGACTGCTTATGAAGGTTTGGAGAGGACTGGATTTTCTTCTGGTAAATCTATTCTTGTTCTTAATGGTTCTGGTGGTGTTGGAAGCTTAGTGATTCAGCTAGCTAAACAAGTTTTTGGAGCTTCAAGAGTTGCTGCCACTTCAAGCACTAGAAATTTGGAGCTGTTGAAAAGCCTTGGAGCCGATTTGGCTATCGACTACACAAAGGAGAACTTTGAAGACTTACCAGAAAAATTTGATGTTGTTTATGATGCCATTGGGCAATGTGACAGGGCAGTGAAGGCTATAAAAGAAGGTGGCAGTGTAGTAGCACTAACAGGTGCTGTTACACCACCTGGATTCAGATTTGTAGTAACTTCCAATGGAGCTGTTCTGAAGAAACTAAACCCTTATTTAGAGAGTGGAAAAGTGAAGCCAATTATAGATCCCAAAGGTCCATTCACCTTTGCTCAAGTTGCTGAAGCATTCTCTTACATTGAAACAAACAAAGCTACTGGAAAGGTTGTTATATTCCCCATCCCATGA 1161 0.4022 MSLSTTTSQFTILPSISSTSSLSHRFSFTFPQKRIQKTCLTTLFSSSSSSAARFLVKSQTSSVSSSEAVKVTSVPSEMKAWVYGEYGGVDVLKFDSNVAVPDVKEDQVLVKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGIVVKVGSEVKEFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLALKPKNLDFVQAASLPLAIETAYEGLERTGFSSGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCDRAVKAIKEGGSVVALTGAVTPPGFRFVVTSNGAVLKKLNPYLESGKVKPIIDPKGPFTFAQVAEAFSYIETNKATGKVVIFPIP 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02123 386 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 227 248 IPR002364 GO:0008270|GO:0016491
Trre16g02123 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 200 323 IPR036291 -
Trre16g02123 386 SUPERFAMILY GroES-like 75 232 IPR011032 -
Trre16g02123 386 Pfam Zinc-binding dehydrogenase 271 382 - -
Trre16g02123 386 Pfam Alcohol dehydrogenase GroES-like domain 106 168 IPR013154 -
Trre16g02123 386 SMART PKS_ER_names_mod 87 382 IPR020843 GO:0016491
Trre16g02123 386 CDD MDR_like_2 78 382 - -
Trre16g02123 386 Gene3D - 85 382 - -
Trre16g02123 386 Gene3D - 219 333 - -
Trre16g02123 386 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 69 386 IPR044626 GO:0016628
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02123 Trre-Chr16 17152812 17156625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02123 102 274 Monolignol Biosynthesis Gene Families AT4G39330 26.633 3.19e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02123 K18980 - gmx:100780585 605.134