Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02122 ATGGAAGAAGAAATGAAATCATTTACGGATCTTGGCTTATCTTTTGAATTGGTGGAAGCTTGTGAAAAAAAACTGTATTGGTATAATCCGCTTAAGATTCAGACAGAAGTGATTCCCCTTGCGCTACAAGGAAAAGATGATGTGATTGGAATTTCCCCACCGCGTTCTGGTAAGTCTGGGGCTTTTGTTCTTCCTATATCGCAGTCCCTTTTAGAAGCCGGACCCAACCTAAACACTTTCTTTGCTTGTGTGCTGTCTCCCACAAGGAAACTTGCTATTCAAATTGGTGACTACTTTCAAGCTCTAGGTTCTCAGTTTGGTGTCAAGTGTGCTGTCCTTTTTGAAGCCACGAACTTGGTACATCAATCCATTCAGATTTCACAGCAACCTCATATTATTGTTGGGACCCCTGGACAAGTCTTTAATAACCTAAAACATACCGAAGGATTTGCTCTTGCTCTTGCTAATTTAAAATACCTGGTCATAGATGAGGCACACCTGCTGTTGAATGATCACTTTGAGGAACAGCTAAATGAGATTTTACGAATGATTCCTAGTGAACGGAGAACATTTCTTTTTTCATCTAAAATCACAGAGAAGCTCCATGCTATCCAATGTGCGTGTTTAAGGAATCCTGTGAAGATTGACGTATCTTCCAAATATTCTACTGTGGCCACACTGCAGCAGCATAGTTGCTTTATGTCAGCAAAACATAAGGATTGCTACCTTGTATACACTCTCGCTGAAATGGCTGGAAGAACATCCATTGTATTCACTCATGGTTGTGGTTTAGCTCTTCTTCTGGCTTTGATTCTTAAGAGTCTTGGTTTCAGAGCCATCCCTATTATTAGATATATGAGTCAGGCAAAGAAACTTGGAGCATTGAATGCGTTCAAGTCTGGGGAGTACAATATTCTCCTTTGTAGTGAGGTAGCTATTAAGGGACTAGATATTCCAGGGGTAGATGTGGTGATTAACTACAACATTCCTAGTGATCCCAACGATTATATGCATCGTGTGGGATGGACTGCTCCTGTTAATGTTGCCATTTCCTTTGTGAACCCAAAGGAAGCGAGACAGTTCAAAATGATAGAGAGACATATAGGCAAGAAGCTACCAGTGTATCCTGCACCATATGAGGAAGTTTTGCTTTTGGAAAGGAGGGTTAGTGAGGCTGAAAGATTGGCACAAAAGGAAATCAAAGAATCCCGTTGGAAGAGTGGAGGATATTTAGGAGATGAGGATGTCAAAAAGATCCCAAGTTTGTTTAAGGCAAGTTTGTGTTAA 1287 0.4079 MEEEMKSFTDLGLSFELVEACEKKLYWYNPLKIQTEVIPLALQGKDDVIGISPPRSGKSGAFVLPISQSLLEAGPNLNTFFACVLSPTRKLAIQIGDYFQALGSQFGVKCAVLFEATNLVHQSIQISQQPHIIVGTPGQVFNNLKHTEGFALALANLKYLVIDEAHLLLNDHFEEQLNEILRMIPSERRTFLFSSKITEKLHAIQCACLRNPVKIDVSSKYSTVATLQQHSCFMSAKHKDCYLVYTLAEMAGRTSIVFTHGCGLALLLALILKSLGFRAIPIIRYMSQAKKLGALNAFKSGEYNILLCSEVAIKGLDIPGVDVVINYNIPSDPNDYMHRVGWTAPVNVAISFVNPKEARQFKMIERHIGKKLPVYPAPYEEVLLLERRVSEAERLAQKEIKESRWKSGGYLGDEDVKKIPSLFKASLC 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02122 428 Gene3D - 221 389 IPR027417 -
Trre16g02122 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 369 IPR027417 -
Trre16g02122 428 Pfam DEAD/DEAH box helicase 32 195 IPR011545 GO:0003676|GO:0005524
Trre16g02122 428 Coils Coil 382 402 - -
Trre16g02122 428 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 242 383 IPR001650 -
Trre16g02122 428 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 39 215 IPR014001 -
Trre16g02122 428 Gene3D - 1 218 IPR027417 -
Trre16g02122 428 CDD SF2_C_DEAD 227 353 - -
Trre16g02122 428 SMART helicmild6 266 347 IPR001650 -
Trre16g02122 428 SMART ultradead3 26 230 IPR014001 -
Trre16g02122 428 Pfam Helicase conserved C-terminal domain 242 342 IPR001650 -
Trre16g02122 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 217 IPR027417 -
Trre16g02122 428 PANTHER RNA HELICASE 3 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02122 Trre-Chr16 17150519 17151805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02122 47 353 Eukaryotic Initiation Factors Gene Family AT5G11170 28.662 9.44e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02122 K14777 - gmx:100775796 469.929