LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g02119	ATGGCTCCAAAAGATGAAGAAAATTCTTCTACACTTGTTCCTTTTGATCCTAAGAAACAATTTGGAAAGGGAGTAAATCTTGACGTGGAAATAGCTCCGCCACCTAATTCCAAACCTCCGGAAAGTTCTCCGTCGAAATTGTCACCGCCACCACCGTCTAAATCTCCTTCGCCTTCACCGCCACCGCCAACACATTCACCACCACCACCTTCTCCTCCACCAAATTCGCCACCTCCATCACCATCACCGCCACCTCAGTCACCGTCTCCACCGCCACCCTCTCCTCCACCGCAGCAACTGTCACCACCACCTTTGCACAACTCTTCATCTCCTTCACGTAAAAATCCATCTCCATCTCCACCTCAGTTTCAATCCCCACCTTCCTTGGGGAAGAAGTCTTCTTCATCTTCTTCTTCTTCACCCTCGAATGATTCACCTTCTTCTTCTTCTTCTTCGCCCAAGAAAGATTCACCTTCTTCTTCTTCTTCTTCTTCAGCCTCGAATGATTCACCGCATAAAGCCTTGCATGCTAAATCAAGAGATTCTTCTCCGCCTAGCTCATCGCCCGCCGAAATAGTTGGTTACACCCTCGCCGGAGTTTTTGTTTTTGCCTTAGTTGCTGTAGCTGTTATTCTCGTGTGTAGGAGGAAGAAAACCAAAGGAGATGTGTATGGTGCACCCTATATACCACCTCATGGTATTAGTTTTCATGTTAAATCAAGTGATGGACATTACTATGTACAGCAACCGAATTCGTTTCAAAATATCTATAGCAATGGGAACATTGGAGGAAGCGGCATAAATCCTTTAGGAGGAGGTCATTTAGATTCGGCGCAGCCCATAAGTGCTCAAATAGTTTTTAGTTATGAGATGGTAATGGAAATAACCAATGCTTTTTCACGTCAAAATGTGATAGGGGAAGGAGGATTTGGGTGTGTTTACAAGGGTAGGCTGCTGGATGGAAAAGAAGTTGCGGTCAAGACTCTTAAGGCTGGTAGTGGGCAGGGAGATAGGGAATTTAGGGCTGAAGTTGAGATCATTAGCCGTGTTCATCATCGACATTTGGTATCGTTGGTTGGTTATTGCATATCAGAGCAGCAAAGAATGCTTATCTATGAGTTCCTCCCTAACGGAAATCTTCATAATCACTTGCATGGAAGTGGAATGCCAGTGTTGGGGTGGGCCAATAGGCTGAAGATAGCTATTGGTGCTGCAAAGGGTTTGGCATATCTGCATGAGGACTGCAGCCAAAAGATTATTCACAGAGATATTAAATCCGCCAACATACTTTTGGATGATGCTTTTGAGGCACAGGTTGCAGACTTTGGACTTGCAAGGCTAGCTGATGCTGCTAATACACATGTATCAACTAGGGTTATGGGTACATTTGGGTACATGGCTCCGGAGTATGCAACAAGTGGAAAATTAACAGATAGATCAGATGTTTTCTCATTTGGCGTTGTCCTGCTTGAGCTTGTAACTGGAAGAAAACCAGTTGATGAAACTATGCCTTTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCATTACTTATCCATGCATTTGAGACACGTGAGTTTGGTGAACTAGTAGATCCAAGACTAGAAAAACACTATGTGGAGAGTGAAATGTTCAGAATGATAGAGGCAGCTGCAGCTTGTGTTCGACACTCAGCCCCTAAACGGCCTCGTATGTCTCAGGTGGTAAGAGCTTTAGACTCTGGAGATGAAATATCTGATTTATCAAATGGGGTGAAATATGGTCATAGCACAGTTTATGATTCTGGCCAATATGACAAAGACATCATGCTATTCAGGATGATGGGCAATGGCAGCTATGGTGATTCTTCTGATTATGATATATACAGTGCAGAATCCAGTCATTCAAGAGAGTATTCGAGATCACGGCATGCATGGATGCATAGTGGTTCGAGTACCGAGTCAGAATCTAGAGCTTTCAATAGCCATAGATGCAGTAGTACTGACTGA	1989	0.4434	MAPKDEENSSTLVPFDPKKQFGKGVNLDVEIAPPPNSKPPESSPSKLSPPPPSKSPSPSPPPPTHSPPPPSPPPNSPPPSPSPPPQSPSPPPPSPPPQQLSPPPLHNSSSPSRKNPSPSPPQFQSPPSLGKKSSSSSSSSPSNDSPSSSSSSPKKDSPSSSSSSSASNDSPHKALHAKSRDSSPPSSSPAEIVGYTLAGVFVFALVAVAVILVCRRKKTKGDVYGAPYIPPHGISFHVKSSDGHYYVQQPNSFQNIYSNGNIGGSGINPLGGGHLDSAQPISAQIVFSYEMVMEITNAFSRQNVIGEGGFGCVYKGRLLDGKEVAVKTLKAGSGQGDREFRAEVEIISRVHHRHLVSLVGYCISEQQRMLIYEFLPNGNLHNHLHGSGMPVLGWANRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDDAFEAQVADFGLARLADAANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDETMPLGDESLVEWARPLLIHAFETREFGELVDPRLEKHYVESEMFRMIEAAAACVRHSAPKRPRMSQVVRALDSGDEISDLSNGVKYGHSTVYDSGQYDKDIMLFRMMGNGSYGDSSDYDIYSAESSHSREYSRSRHAWMHSGSSTESESRAFNSHRCSSTD	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g02119	662	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	419	431	IPR008271	GO:0004672\|GO:0006468
	Trre16g02119	662	Gene3D	Transferase(Phosphotransferase) domain 1	375	588	-	-
	Trre16g02119	662	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	200	624	IPR047117	-
	Trre16g02119	662	FunFam	proline-rich receptor-like protein kinase PERK8	375	587	-	-
	Trre16g02119	662	MobiDBLite	consensus disorder prediction	1	189	-	-
	Trre16g02119	662	FunFam	Proline-rich receptor-like protein kinase PERK8	274	374	-	-
	Trre16g02119	662	SMART	serkin_6	299	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g02119	662	CDD	STKc_IRAK	305	573	-	-
	Trre16g02119	662	ProSiteProfiles	Protein kinase domain profile.	299	592	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g02119	662	MobiDBLite	consensus disorder prediction	33	104	-	-
	Trre16g02119	662	ProSitePatterns	Protein kinases ATP-binding region signature.	305	327	IPR017441	GO:0005524
	Trre16g02119	662	MobiDBLite	consensus disorder prediction	126	172	-	-
	Trre16g02119	662	SUPERFAMILY	Protein kinase-like (PK-like)	280	572	IPR011009	-
	Trre16g02119	662	MobiDBLite	consensus disorder prediction	640	662	-	-
	Trre16g02119	662	Pfam	Protein tyrosine and serine/threonine kinase	302	572	IPR001245	GO:0004672\|GO:0006468
	Trre16g02119	662	Gene3D	Phosphorylase Kinase; domain 1	275	374	-	-
	Trre16g02119	662	PRINTS	Proline rich extensin signature	40	61	-	-
	Trre16g02119	662	PRINTS	Proline rich extensin signature	63	79	-	-
	Trre16g02119	662	PRINTS	Proline rich extensin signature	80	97	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g02119	Trre-Chr16	17110987	17114538	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g02119	192	627	Trihelix Transcription Factor Family	AT1G70460	64.889	0.0	570

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Trre16g02119		PK_Tyr_Ser-Thr	4.7e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g02119	-		-	gmx:100797563	642.114