Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02119 ATGGCTCCAAAAGATGAAGAAAATTCTTCTACACTTGTTCCTTTTGATCCTAAGAAACAATTTGGAAAGGGAGTAAATCTTGACGTGGAAATAGCTCCGCCACCTAATTCCAAACCTCCGGAAAGTTCTCCGTCGAAATTGTCACCGCCACCACCGTCTAAATCTCCTTCGCCTTCACCGCCACCGCCAACACATTCACCACCACCACCTTCTCCTCCACCAAATTCGCCACCTCCATCACCATCACCGCCACCTCAGTCACCGTCTCCACCGCCACCCTCTCCTCCACCGCAGCAACTGTCACCACCACCTTTGCACAACTCTTCATCTCCTTCACGTAAAAATCCATCTCCATCTCCACCTCAGTTTCAATCCCCACCTTCCTTGGGGAAGAAGTCTTCTTCATCTTCTTCTTCTTCACCCTCGAATGATTCACCTTCTTCTTCTTCTTCTTCGCCCAAGAAAGATTCACCTTCTTCTTCTTCTTCTTCTTCAGCCTCGAATGATTCACCGCATAAAGCCTTGCATGCTAAATCAAGAGATTCTTCTCCGCCTAGCTCATCGCCCGCCGAAATAGTTGGTTACACCCTCGCCGGAGTTTTTGTTTTTGCCTTAGTTGCTGTAGCTGTTATTCTCGTGTGTAGGAGGAAGAAAACCAAAGGAGATGTGTATGGTGCACCCTATATACCACCTCATGGTATTAGTTTTCATGTTAAATCAAGTGATGGACATTACTATGTACAGCAACCGAATTCGTTTCAAAATATCTATAGCAATGGGAACATTGGAGGAAGCGGCATAAATCCTTTAGGAGGAGGTCATTTAGATTCGGCGCAGCCCATAAGTGCTCAAATAGTTTTTAGTTATGAGATGGTAATGGAAATAACCAATGCTTTTTCACGTCAAAATGTGATAGGGGAAGGAGGATTTGGGTGTGTTTACAAGGGTAGGCTGCTGGATGGAAAAGAAGTTGCGGTCAAGACTCTTAAGGCTGGTAGTGGGCAGGGAGATAGGGAATTTAGGGCTGAAGTTGAGATCATTAGCCGTGTTCATCATCGACATTTGGTATCGTTGGTTGGTTATTGCATATCAGAGCAGCAAAGAATGCTTATCTATGAGTTCCTCCCTAACGGAAATCTTCATAATCACTTGCATGGAAGTGGAATGCCAGTGTTGGGGTGGGCCAATAGGCTGAAGATAGCTATTGGTGCTGCAAAGGGTTTGGCATATCTGCATGAGGACTGCAGCCAAAAGATTATTCACAGAGATATTAAATCCGCCAACATACTTTTGGATGATGCTTTTGAGGCACAGGTTGCAGACTTTGGACTTGCAAGGCTAGCTGATGCTGCTAATACACATGTATCAACTAGGGTTATGGGTACATTTGGGTACATGGCTCCGGAGTATGCAACAAGTGGAAAATTAACAGATAGATCAGATGTTTTCTCATTTGGCGTTGTCCTGCTTGAGCTTGTAACTGGAAGAAAACCAGTTGATGAAACTATGCCTTTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCATTACTTATCCATGCATTTGAGACACGTGAGTTTGGTGAACTAGTAGATCCAAGACTAGAAAAACACTATGTGGAGAGTGAAATGTTCAGAATGATAGAGGCAGCTGCAGCTTGTGTTCGACACTCAGCCCCTAAACGGCCTCGTATGTCTCAGGTGGTAAGAGCTTTAGACTCTGGAGATGAAATATCTGATTTATCAAATGGGGTGAAATATGGTCATAGCACAGTTTATGATTCTGGCCAATATGACAAAGACATCATGCTATTCAGGATGATGGGCAATGGCAGCTATGGTGATTCTTCTGATTATGATATATACAGTGCAGAATCCAGTCATTCAAGAGAGTATTCGAGATCACGGCATGCATGGATGCATAGTGGTTCGAGTACCGAGTCAGAATCTAGAGCTTTCAATAGCCATAGATGCAGTAGTACTGACTGA 1989 0.4434 MAPKDEENSSTLVPFDPKKQFGKGVNLDVEIAPPPNSKPPESSPSKLSPPPPSKSPSPSPPPPTHSPPPPSPPPNSPPPSPSPPPQSPSPPPPSPPPQQLSPPPLHNSSSPSRKNPSPSPPQFQSPPSLGKKSSSSSSSSPSNDSPSSSSSSPKKDSPSSSSSSSASNDSPHKALHAKSRDSSPPSSSPAEIVGYTLAGVFVFALVAVAVILVCRRKKTKGDVYGAPYIPPHGISFHVKSSDGHYYVQQPNSFQNIYSNGNIGGSGINPLGGGHLDSAQPISAQIVFSYEMVMEITNAFSRQNVIGEGGFGCVYKGRLLDGKEVAVKTLKAGSGQGDREFRAEVEIISRVHHRHLVSLVGYCISEQQRMLIYEFLPNGNLHNHLHGSGMPVLGWANRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDDAFEAQVADFGLARLADAANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDETMPLGDESLVEWARPLLIHAFETREFGELVDPRLEKHYVESEMFRMIEAAAACVRHSAPKRPRMSQVVRALDSGDEISDLSNGVKYGHSTVYDSGQYDKDIMLFRMMGNGSYGDSSDYDIYSAESSHSREYSRSRHAWMHSGSSTESESRAFNSHRCSSTD 662
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02119 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Trre16g02119 662 Gene3D Transferase(Phosphotransferase) domain 1 375 588 - -
Trre16g02119 662 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 200 624 IPR047117 -
Trre16g02119 662 FunFam proline-rich receptor-like protein kinase PERK8 375 587 - -
Trre16g02119 662 MobiDBLite consensus disorder prediction 1 189 - -
Trre16g02119 662 FunFam Proline-rich receptor-like protein kinase PERK8 274 374 - -
Trre16g02119 662 SMART serkin_6 299 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02119 662 CDD STKc_IRAK 305 573 - -
Trre16g02119 662 ProSiteProfiles Protein kinase domain profile. 299 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02119 662 MobiDBLite consensus disorder prediction 33 104 - -
Trre16g02119 662 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Trre16g02119 662 MobiDBLite consensus disorder prediction 126 172 - -
Trre16g02119 662 SUPERFAMILY Protein kinase-like (PK-like) 280 572 IPR011009 -
Trre16g02119 662 MobiDBLite consensus disorder prediction 640 662 - -
Trre16g02119 662 Pfam Protein tyrosine and serine/threonine kinase 302 572 IPR001245 GO:0004672|GO:0006468
Trre16g02119 662 Gene3D Phosphorylase Kinase; domain 1 275 374 - -
Trre16g02119 662 PRINTS Proline rich extensin signature 40 61 - -
Trre16g02119 662 PRINTS Proline rich extensin signature 63 79 - -
Trre16g02119 662 PRINTS Proline rich extensin signature 80 97 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre16g02119 Trre-Chr16 17110987 17114538 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02119 192 627 Trihelix Transcription Factor Family AT1G70460 64.889 0.0 570
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trre16g02119 PK_Tyr_Ser-Thr 4.7e-49 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02119 - - gmx:100797563 642.114