Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02118 ATGAGTGATATTGGTGTTGTTCAATTGCTTAGACCCTTTGTTGAGACTAAAGCTTGGGATTATGTTGTTGTTTGGAAATATGGAAATGACCCATCTAGGTTTATTGAATGGATGGGTTGTTGTTGTTGTGGTGGAAACATGAATCTCAAAGAGGAAATGGATGATGAATATCACTTGGCTCCAATTTGTAGGGATACCCTTTTTCATCATTCAGTTAGAACAAAGACTTGTGAGGCTATTGCCAAGCTTCCTTTTGCAATGTCTCTCTATTCTGGTGTCCATGCAGAGGTTGCAATATCCCAACAACCAAGATGGCTTATCCATGACCATGAGGACTCAATTGGAACCCAAGTTTTGATCCCTATTATTGGTGGTCTTGTTGAGCTTTTCACTGAAAAGCTGGTCCCAAAAGATATAAATATCCTGGAGTTCATTTCAACACACTGTTTTGTCTCTATAAACCAAGAGGCCATATCTGCACAGAGCTATACGAACATGAACTTCAATGAGCATTATTACACTTTAAATCCTGGTCTAGCTGGAGAAAACCATAGCAGCTCTAATCCTGGCATTGAAGGACCCTCCAATGGATCTTTTCCTTCAACTGAGAACCTATCATTCGATTCAAACTTTGGTTGCTTGGTTCCAAATGAATATCTGAATCAACCAGTTAAAATGTCTCCTAAACAAAAAGTTAAAAGCCACAGATACAATAAAACTTCAGCGAAATGTCAGAGTAGTTTGAGTTTCAATTGTGGCAATGGGGAAGAAGATAAAGAAAAAATTTACAGGGTGGAGCCTAAAAAGGAAGTGTATCATGCTAAAAATCTTATCACAGAGAGAAATAGGAGGAAAAGAATAAAAACCGGGCTTTTTACTCTAAGGTCTCTAGTCCCTAATATAACAAAGATGGATAGAGCATCAATTCTTGGGGATGCGATTGAATATATAAAGGAATTGCAGAGGCAAGAGATAGAACTTCAAGATGAGGTCAAGGCTTTAGAAGGTGAGGACTGTGAGAAGAACAAACTACAATTGAGGGTGCAAAGAGACAAAGAACAAGAAGAAGTAACCAGAAGTATACCTCTCACTGAGATTAAGCAAGGTTCTTCTGATTCCACTAGAAATACTGAGATGAAGTTGCAAGTAGAAGTGAATCATATTGGCAGAACAAATTTCATGATTAAGTTGTGCTGTGAGCAGAAGCAATGTGGATTTTCAAGGTTGATGGAAGCTATAGATTCATTTGGACTCAATGTGGTAAATGCAAACATGACCACATTTGATAGGAAAGTCCTGAACATTCTAATGGTTGAGGCAACTGCGGAGGATATTTCCGCAACAAAACTCAGAGAGTATCTGATAAAGCAAACTGGTTGA 1380 0.3833 MSDIGVVQLLRPFVETKAWDYVVVWKYGNDPSRFIEWMGCCCCGGNMNLKEEMDDEYHLAPICRDTLFHHSVRTKTCEAIAKLPFAMSLYSGVHAEVAISQQPRWLIHDHEDSIGTQVLIPIIGGLVELFTEKLVPKDINILEFISTHCFVSINQEAISAQSYTNMNFNEHYYTLNPGLAGENHSSSNPGIEGPSNGSFPSTENLSFDSNFGCLVPNEYLNQPVKMSPKQKVKSHRYNKTSAKCQSSLSFNCGNGEEDKEKIYRVEPKKEVYHAKNLITERNRRKRIKTGLFTLRSLVPNITKMDRASILGDAIEYIKELQRQEIELQDEVKALEGEDCEKNKLQLRVQRDKEQEEVTRSIPLTEIKQGSSDSTRNTEMKLQVEVNHIGRTNFMIKLCCEQKQCGFSRLMEAIDSFGLNVVNANMTTFDRKVLNILMVEATAEDISATKLREYLIKQTG 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02118 459 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 141 447 - -
Trre16g02118 459 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 320 IPR011598 GO:0046983
Trre16g02118 459 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 146 IPR025610 -
Trre16g02118 459 SMART finulus 277 326 IPR011598 GO:0046983
Trre16g02118 459 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 273 336 IPR036638 GO:0046983
Trre16g02118 459 Coils Coil 317 337 - -
Trre16g02118 459 Gene3D - 265 338 IPR036638 GO:0046983
Trre16g02118 459 Pfam Helix-loop-helix DNA-binding domain 278 321 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02118 Trre-Chr16 17107434 17110294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02118 6 458 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 32.087 2.49e-70 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g02118 bHLH-MYC_N 6.8e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02118 - - psat:127075085 646.736