Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02117 ATGCTTTCAATGAGTGATATTGGTGTTGTTCAATTGCTTAGACCCTTTGTTGAGACTAAAGCTTGGGATTATGTTGTTGTTTGGAAATATGGAAATGACCCATCTAGGTTTATTGAATGGATGGGTTGTTGTTGTTGTGGTGGAAACATGAATCTCAAAGAGGAAATGGATGATGAATATCACTTGGCTCCAATTTGTAGGGATACCCTTTTTCATCATTCAGTTAGAACAAAGACTTGTGAGGCTATTGCCAAGCTTCCTTTTGCAATGTCTCTCTATTCTGGTGTCCATGCAGAGGTTGCAATATCCCAACAACCAAGATGGCTTATCCATGACCATGAGGACTCAATTGGAACCCAAGTTTTGATCCCTATTATTGGTGGTCTTGTTGAGCTTTTCACTGAAAAGCTGGTCCCAAAAGATATAAATATCCTGGAGTTCATTTCAACACACTGTTTTGTCTCTATAAACCAAGAGGCCATATCTGCACAGAGCTATACGAACATGAACTTCAATGAGCATTATTACACTTTAAATCCTGGTCTAGCTGGAGAAAACCATAGCAGCTCTAATCCTGGCATTGAAGGACCCTCCAATGGATCTTTTCCTTCAACTGAGAACCTATCATTCGATTCAAACTTTGGTTGCTTGGTTCCAAATGAATATCTGAATCAACCAGTTAAAATGTCTCCTAAACAAAAAGTTAAAAGCCACAGATACAATAAAACTTCAGCGAAATGTCAGAGTAGTTTGAGTTTCAATTGTGGCAATGGGGAAGAAGATAAAGAAAAAATTTACAGGGTGGAGCCTAAAAAGGAAGTGTATCATGCTAAAAATCTTATCACAGAGAGAAATAGGAGGAAAAGAATAAAAACCGGGCTTTTTACTCTAAGGTCTCTAGTCCCTAATATAACAAAGATGGATAGAGCATCAATTCTTGGGGATGCGATTGAATATATAAAGGAATTGCAGAGGCAAGAGATAGAACTTCAAGATGAGGTCAAGGCTTTAGAAGGTGAGGACTGTGAGAAGAACAAACTACAATTGAGGGTGCAAAGAGACAAAGAACAAGAAGAAGTAACCAGAAGTATACCTCTCACTGAGATTAAGCAAGGTTCTTCTGATTCCACTAGAAATACTGAGATGAAGTTGCAAGTAGAAGTGAATCATATTGGCAGAACAAATTTCATGATTAAGTTGTGCTGTGAGCAGAAGCAATGTGGATTTTCAAGGTTGATGGAAGCTATAGATTCATTTGGACTCAATGTGGTAAATGCAAACATGACCACATTTGATAGGAAAGTCCTGAACATTCTAATGGTTGAGGCAACTGCGGAGGATATTTCCGCAACAAAACTCAGAGAGTATCTGATAAAGCAAACTGGTTGA 1389 0.383 MLSMSDIGVVQLLRPFVETKAWDYVVVWKYGNDPSRFIEWMGCCCCGGNMNLKEEMDDEYHLAPICRDTLFHHSVRTKTCEAIAKLPFAMSLYSGVHAEVAISQQPRWLIHDHEDSIGTQVLIPIIGGLVELFTEKLVPKDINILEFISTHCFVSINQEAISAQSYTNMNFNEHYYTLNPGLAGENHSSSNPGIEGPSNGSFPSTENLSFDSNFGCLVPNEYLNQPVKMSPKQKVKSHRYNKTSAKCQSSLSFNCGNGEEDKEKIYRVEPKKEVYHAKNLITERNRRKRIKTGLFTLRSLVPNITKMDRASILGDAIEYIKELQRQEIELQDEVKALEGEDCEKNKLQLRVQRDKEQEEVTRSIPLTEIKQGSSDSTRNTEMKLQVEVNHIGRTNFMIKLCCEQKQCGFSRLMEAIDSFGLNVVNANMTTFDRKVLNILMVEATAEDISATKLREYLIKQTG 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02117 462 SMART finulus 280 329 IPR011598 GO:0046983
Trre16g02117 462 Pfam Helix-loop-helix DNA-binding domain 281 324 IPR011598 GO:0046983
Trre16g02117 462 Coils Coil 320 340 - -
Trre16g02117 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 274 323 IPR011598 GO:0046983
Trre16g02117 462 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 11 149 IPR025610 -
Trre16g02117 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 276 339 IPR036638 GO:0046983
Trre16g02117 462 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 144 450 - -
Trre16g02117 462 Gene3D - 268 341 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02117 Trre-Chr16 17107425 17110294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02117 9 461 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 30.948 2.65e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g02117 bHLH-MYC_N 6.9e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02117 - - psat:127075085 646.736