Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02099 ATGAGTGAAAGAGAAAAGTTTGAGCTAGAAAGTAAGGAGGGTCCTTTGGATTGGAGGTTTGTTAATGCTACCAACCTTGCTAATTCATCTGTGGATTTGGTTTCAATGGAAAATTCTTTGAATTTGAGTAGAGGGGATTTGATGATGGGTTCTTCTTCATGTTCTAATTCAATGGTGGATTCATATAGTCCTAACTTCATGGACCTTCTTACCAATTCTGAAAACTTGGCTGGTTTTTGTGATGTTATTGGGCAGAGTCATGTAAGAGTTGGGTGTGATGATAGAACATTAGGAATGGGTTGGAACCTTGCTAGTTCTATGATGAAGAGGGATGGTATTTTGCCAAATGGAACTGGGATGTTTCCTCAAAGTTTGTCTCAGTTTCCAACTGATTCTGGATTTATTGATGCTGCAAGAATGTCGTGCTTTAGTGCCGGGGGTTTCGGTGATATGGTGAACTCATGTGGGATTCCTCAATCTATGGCTCTACATGTGTCTCGGTCCGTTGAGCATCTTGGTAGTGATGGAAGTCCACTCCAAAATGATAGAAAAAGTGATTGTCCTGTAATGTCTCAAGATGAAGGGAAACAAGCTCTTCGAGGGTGTTCTAATGAGGCTGATAGGGCTGAATCAAGCGGTGATGATGGTGCTGGTAATGGTAGCCATGATGATTCCCAAATGTTGGATTCTACAAGTGGGGAACCTTCTATTAAAGGTCTAAAATCTAAGAAAAGGAAAAGAAGTAGGCAGGATGGTGATAGTGATAAAGCCGCTAAAACTCTTGAGCTTCCAAGGGAAACTGCAAAAGACAACTGTGAGAATAGAAAAAAGGGAAAGCAGCTAACAACTTCAACAGCCAAGGCTTCTGGGAAGAATGCCAAACAGGGGTCTCAAACTTCTGATCCGCCTAATGAGGGATACGTACATGTCAGGGCTCGCCGTGGTCAAGCAACAAATAGCCATAGTCTTGCAGAGAGAGTGCGGAGAGAAAAGATCAGTGAAAGAATGAAATTTCTTCAAGATCTTGTACCTGGATGCAACAAGGTCACTGGCAAGGCGGTGATGCTAGACGAAATCATTAACTATGTACAGTCTCTTCAACAACAAGTTGAGTTTTTATCGATGAAACTTGCAACAGTTAATCCGCATATGGATTTTAATATGGAACGGCTGCTTCATAAAGATATTCTTCAACACCGGCCGGGTCCGTCATCTACTTTGGGGTTTCTCACAGAAATGCCAATGGCTTTTCCTCCATTATTACATCCATCTCAACCGGGACTAATTCGTTCGCCTCTACCTAACATGGCAAATTCATCACATTTACTCGGTCATACCGTTCAACCACAGTCATCGCCTTTGACCGGAGAATTCAAAGAGCCAAATCAGGTTAATCCATTGCAAGCAGCCAAGCCATGA 1419 0.4235 MSEREKFELESKEGPLDWRFVNATNLANSSVDLVSMENSLNLSRGDLMMGSSSCSNSMVDSYSPNFMDLLTNSENLAGFCDVIGQSHVRVGCDDRTLGMGWNLASSMMKRDGILPNGTGMFPQSLSQFPTDSGFIDAARMSCFSAGGFGDMVNSCGIPQSMALHVSRSVEHLGSDGSPLQNDRKSDCPVMSQDEGKQALRGCSNEADRAESSGDDGAGNGSHDDSQMLDSTSGEPSIKGLKSKKRKRSRQDGDSDKAAKTLELPRETAKDNCENRKKGKQLTTSTAKASGKNAKQGSQTSDPPNEGYVHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPHMDFNMERLLHKDILQHRPGPSSTLGFLTEMPMAFPPLLHPSQPGLIRSPLPNMANSSHLLGHTVQPQSSPLTGEFKEPNQVNPLQAAKP 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02099 472 CDD bHLH_AtBPE_like 306 391 - -
Trre16g02099 472 MobiDBLite consensus disorder prediction 246 277 - -
Trre16g02099 472 MobiDBLite consensus disorder prediction 431 462 - -
Trre16g02099 472 MobiDBLite consensus disorder prediction 278 304 - -
Trre16g02099 472 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 201 425 IPR024097 GO:0006355
Trre16g02099 472 FunFam Basic helix-loop-helix transcription factor 313 386 - -
Trre16g02099 472 MobiDBLite consensus disorder prediction 428 472 - -
Trre16g02099 472 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 386 IPR036638 GO:0046983
Trre16g02099 472 SMART finulus 322 372 IPR011598 GO:0046983
Trre16g02099 472 Gene3D - 313 386 IPR036638 GO:0046983
Trre16g02099 472 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 366 IPR011598 GO:0046983
Trre16g02099 472 Pfam Helix-loop-helix DNA-binding domain 319 367 IPR011598 GO:0046983
Trre16g02099 472 MobiDBLite consensus disorder prediction 223 237 - -
Trre16g02099 472 MobiDBLite consensus disorder prediction 169 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02099 Trre-Chr16 16976157 16978887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02099 1 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.697 2.45e-95 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g02099 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02099 - - tpra:123921399 848.966