Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02079 ATGGAGAAGATACTGGAGAGGTATGAAAGGTATTCCTATGCAGAGAGACAGTTGGTTGCAAATGATTCCGAGTCACAGGGAAATTGGACAATTGAGTATACAAGACTGAAGGCTAAGATTGATCTTTTGCAAAGAAACTATAGGCACTACATGGGAGAAGATTTGGGATCAATGAGTCTGAAAGAGCTTCAGAGTCTTGAACAGCAGTTAGATACTGCTCTCAAACTCATTCGTACACGCAGGAACCAACTCATGTACGAGTCCATTTCAGAGCTTCAGAAAAAGGAGAAAGTGATTCAAGAGCAGAATAACATGCTTGCAAAAAAGATCAAGGAGAAAGAAAAGATTGCAGCTCAGCAGCAGCAAGCACAATGGGAGAACCCAAATCATCATGGAGTCAATCCAAATTACTTACTACAGCAGCAACATCCAAGTTTGAACATGGGAGGCAATTACCGTGAGGATCAAGCACCAGAAATGGGGAGGAATGAGCTTGACCTGACCCTGGAACCATTGTATACCTGCCACCTTGGATGCTTTTAA 543 0.4254 MEKILERYERYSYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLGSMSLKELQSLEQQLDTALKLIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKEKEKIAAQQQQAQWENPNHHGVNPNYLLQQQHPSLNMGGNYREDQAPEMGRNELDLTLEPLYTCHLGCF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02079 180 Pfam K-box region 22 110 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre16g02079 180 Coils Coil 33 53 - -
Trre16g02079 180 ProSiteProfiles K-box domain profile. 26 116 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre16g02079 180 Coils Coil 89 119 - -
Trre16g02079 180 Coils Coil 63 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02079 Trre-Chr16 16812554 16816372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02079 1 180 MADS-box Gene Family AT1G69120 62.500 2.15e-75 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02079 K09264 - gmx:100810129 277.715