Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02076 ATGGAGCTATTCCCAGCACAACCAGATTTGTCATTGCAAATCAGTCTTCCAAATTCAGATGATCAAGAAAATATGAATTTAGGATTTTGGAAGAGAGCTTTGGAGTCAAAAAAAGATTCAAATTATACCTTTGATCTTTCTCTCTCTAATCCAAGGGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTACTACTACTACTACTTCAAATTCAAACCTCAACAATCTCATAACTCACAACACTTTTCTACCATTTCATCAAACCCTAAGTGAAGAGCTAGGTTTTCTCAAACCTATAAGAGGAATTCCAGTTTATAATCATCAAAACCCTCACCATCATCATCATCCTATTGGATTATTTTCTCAACCTTCTGTTTCAAGTTCAACAACAACTTTTCATTCTCAAGTACCATTGATTAGATCAAAGTTGTTGCCGCGGTTTCCTTCGAAGCGTAGCGTGAGAGCTCCAAGGATGCGTTGGACTACTACTCTTCATAATCGATTTGTTCATGCTGTTGAGCTTTTGGGTGGCCATGAAAGAGCTACACCCAAATCAGTTCTTGAGCTAATGGATGTAAAGGATCTAACGTTATCACATGTTAAGTCACATTTGCAGATGTACCGGACGGTGAAAATTACAGATAGAGCAGCAGTATCACCAGGACAATCTGAGTTGTATGAAAATGGTTCATCTGGAGACACTTCTGAAGACGTCATGTTTGACATAAACTCTTCAACAAGATCTAATGATCTTCCCATTAAATTGGATAAAGAAATTGCTAATCAAGATGAAGAAAATTGTGGCATTTGGAGAAACAACTCTTCAAGGGAAGCTTGGTTGCATGGTAACCCAAAGGTCCATCCTCTTGAAAATGTGTCTTCTCTTGAGGGAATGGATCCAAAGTATCTAAGCAACGAAAGAACTTCATCAGATGGAAGCTCTTCATCAAACATTTCAAGAACACACCTCAAGAAACCAAATTTAGATTTGGAATTCACCTTGGGCACGTCACTTTGA 1017 0.3786 MELFPAQPDLSLQISLPNSDDQENMNLGFWKRALESKKDSNYTFDLSLSNPRVSSSSSSSSSTTTTTTSNSNLNNLITHNTFLPFHQTLSEELGFLKPIRGIPVYNHQNPHHHHHPIGLFSQPSVSSSTTTFHSQVPLIRSKLLPRFPSKRSVRAPRMRWTTTLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLSHVKSHLQMYRTVKITDRAAVSPGQSELYENGSSGDTSEDVMFDINSSTRSNDLPIKLDKEIANQDEENCGIWRNNSSREAWLHGNPKVHPLENVSSLEGMDPKYLSNERTSSDGSSSSNISRTHLKKPNLDLEFTLGTSL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02076 338 MobiDBLite consensus disorder prediction 303 322 - -
Trre16g02076 338 NCBIfam myb-like DNA-binding domain, SHAQKYF class 156 209 IPR006447 GO:0003677
Trre16g02076 338 SUPERFAMILY Homeodomain-like 153 209 IPR009057 -
Trre16g02076 338 Gene3D - 155 212 - -
Trre16g02076 338 FunFam Myb family transcription factor 154 212 - -
Trre16g02076 338 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 336 IPR044847 GO:0000976|GO:0006355|GO:0010158
Trre16g02076 338 MobiDBLite consensus disorder prediction 281 322 - -
Trre16g02076 338 Pfam Myb-like DNA-binding domain 157 208 IPR001005 -
Trre16g02076 338 MobiDBLite consensus disorder prediction 48 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02076 Trre-Chr16 16743150 16750874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02076 1 336 G2-like Transcription Factor Family AT4G17695 38.753 3.48e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre16g02076 Myb_DNA-binding 4.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02076 - - aprc:113868756 369.777