Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02068 ATGGTGAGTCATGGAGGACGGGAAAAGAATTCCTCAAGGCAAATCTATGATCAGAAATTGGAGGCCCTTGCTTTGGAAAGGAATGCATTATGGCATCGAGTTAGAGTGATTCGTGGGATGAAGTATGAAAGGAGCGCGTCCGGTTCTAGTGTGGTATATATTAGTGAAGGACTATATAGAATTATAAATTGTAGGTTTGAAGTTGGAAAGTCTGGTTTTGGAGTATATAAGTACAAGCTTTCAAGAATGGAGGGACAAGCTAAGTTGGGTAGTGCTATTCTCAAAGAAGCTAGGGATATTAAGAAAAGTAGGTTGGATTTTAAATCAATCTCCTTCTATTGA 342 0.3889 MVSHGGREKNSSRQIYDQKLEALALERNALWHRVRVIRGMKYERSASGSSVVYISEGLYRIINCRFEVGKSGFGVYKYKLSRMEGQAKLGSAILKEARDIKKSRLDFKSISFY 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02068 113 ProSiteProfiles YDG domain profile. 1 82 IPR003105 -
Trre16g02068 113 Pfam SAD/SRA domain 3 86 IPR003105 -
Trre16g02068 113 SUPERFAMILY PUA domain-like 8 95 IPR015947 -
Trre16g02068 113 SMART G9a_1 1 86 IPR003105 -
Trre16g02068 113 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 3 88 - -
Trre16g02068 113 Gene3D - 2 110 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02068 Trre-Chr16 16622438 16622779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02068 6 86 Su(var)3-9 homologs AT5G04940 45.238 3.39e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02068 K11420 - tpra:123924427 145.591