Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02067 ATGTCAAGACGAGGTTCAAGGGGGAAAAAGGTTTCATTGCTCAAGCTTTTCTCATTTGCTGACTTCTATGATTATGTCTTGATGGCCGTTGGATCTGTTGGTGCATGCATTCATGGTGCATCGGTGCCTGTTTTCTTTATCTTCTTTGGAAAAATTATTAATGCCATAGGTTTGGCTTATCTTTATCCTAAAGAAGCTTCTCACCAAGTTGCCAAGTATGCGTTGGATTTTCTGTATCTAAGTATAGTAATATTGTTTTCATCATGGGCAGAGGTAGCTTGTTGGATGCATACTGGGGAACGTCAAGTAGCAAAGATGAGAATGGCATATTTAAAGTCAATGTTGAATCAAGATATAAGTCTTTTTGATACTGAGTCATCAACTGGAGATGTTATTTCTTCTATTACAAGTGACATCATAGTTGTTCAAGAAGCATTATCTGAGAAGGTTGGGAACTTTATGCACTACATAAGCCGATTTATAGCAGGATTTATCATCGGCTTTTTCAGAGTTTGGCAGATCAGTATAGTGACACTTGCTATTGTTCCTTTGATTGGTATTGCTGGAGGTCTTTATGCATATGTGACATTCGGGCTTATTGCAAAAGTTCGTAAATCATATCTTAGGGCAGGTGAAATCGCTCAGGAGGTGATAGGAAATGTAAGAACCGTACAAGCATTTGGAGGAGAACAAAGAGCGGTGATATCATACAAAGTGGCTCTGAGGAACACGTATAAGAATGGTCGAAAAGCAGGTTTAGCAAAGGGTCTAGGACTAGGCTCTATGCATTGTGTCCTTTTTCTATCATGGGCTTTGCTTGTTTGGTTTACAAGTATTATTGTTCACAAGGGCATCGCCAATGGTGGAGTCGCTTTCACTACCATGCTCAATGTCGTTATCTCTGGCCTGTCACTTGGGCAGGCAACACCAGACATTGCGGCATTTATTAGAGCAAAGACAGCAGCTTATCTCATTTTCGAGATGATAGAGAGAGACATAGTTAGCAAAAAAACCTCAAAAGCTTGTCGAAAATTAAAGAAAATAGATGGTCACATACAATTTATTAATGTCTGTTTCACTTATCCATCTCGTCCTGATGTTGCTATTTTCAACAATCTTTATCTTGAAATTCCTTCAGGTAAAGTTTTGGCACTTGTAGGAGGGAGTGGTTCAGGAAAAAGTACAATTATATCATTAATCGAGCGTTTCTATGAACCAATTTCTGGTCAAATTCTGTTAGATAAGAATGATATAAAAGAACTTGATCTTAAATGGCTTAGACAACAAATTGGACTAGTTAATCAAGAGCCTGCACTTTTTGCTACAAGCATAAGGGAGAATATATTGTATGGTAAAAATGATGCCACTCCTGAGGAACTAAACCGTGCTTTGGAACTTTCTAATGCTCACTCTTTCATCAACAATCTTCCTGATGGATTAGATACTCAGGTTGGTGAGAGAGGAATACAATTATCAGGGGGACAAAAGCAGAGAATTGCAATATCTCGTGCTATAGTTAAAAATCCATCAATCCTTTTATTAGATGAAGCAACTAGTGCTCTAGACGCGGAGTCTGAGAAAAGTGTACAAGAAGCTCTTGATCGTGTCATGATTGGTAGAACAACTGTGATAGTGGCACATAGACTTTCCACCATTAGGAATGCAGATATGATAGCTGTTGTTGAACGAGGGAGCATCGTGGAAACTGGAAATCATGAAGAGCTCATTTCCAACTCAAATGGTGTATATGTATCTCTTGTTCAAGGCCACCCTTCTACGGATCCTTGCTTGGGACAGTCATCAAGCATAAAGAACTTGGTAGAAACATCCCATACATCAACTATTGGTAGCAGTTTTCGTTCGGATAAAGACTCTACTGGTGCATGTGCTGATGAAGCAGGAAGTGTTGAAAAGCCGAGACATGTTTCATTAATAAGATTATATTCAATGATTGGTCCTTATTGGTCTTATGGAGTTTTTGGAACCTTAGCTGCTTTTACTACTGGTGCTCTTATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTTGTATCATATTATATGGATTGGGATAGCACACAACATGAAGTGAAAAAAATTGCTTTCCTCTTCTGTGGAGCAGCAATTGTAGCTATCACTGCCTATACCATTGAACATCTTTCTTTCGGAATCATGGGCGAACGACTTACCCTTCGTGTCAGGGAAATTATGATTTCTGCTATTTTGAAGAATGAAATCGGTTGGTTTGATGATACGAGAAACTCGAGTACTATGCTTTCATCACGTTTAGAGACTGATGCAACTTTGTTAAAAACAATAGTGGTGGACCGTTCTACAATTCTTTTGCAGAATGTTGGCCTAGTTGTTACTTCATTTATTATTGCATTCATTTTGAACTGGAGGATAACACTTGTTGTCTTGGCAACATATCCTTTGATCATTAGTGGTCACATTGGTGAGAAACTTTTCATGCAAGGATTTGGTGGCAACCTAAGCAAAGCATATCTAAAAGCAAACATGTTAGCTGGGGAGGCTGTTAGTAATATAAGGACTGTGGCTGCATTTTGTGCAGAAGAAAAGATTATTGGTCTTTATGCTGATGAGCTTGTTGAGCCTTCCAAACGTTCATTCAAACGAGGCCAAATTGCTGGCATATTTTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCATAGCCTTGTGGTATGGATCCTTGTTGGTTGAAAAGGATCTTTCTACCTTTAAATCAATCATGAAGTCATTTATGGTTTTAATAGTAACAGCATTGGCTATGGGGGAAACATTGGCACTTGCACCAGACCTTTTGAAAGGGAATCAAATGGTTTCATCAATATTTGATATGATAGATAGAAAGTCAGGAATAATGTATAATGTTGGAGAAGAGTTGATGACAGTGGAAGGAACAATTGAGCTAAGAAGGATCAATTTTAGCTATCCTTCAAGACCAGACATTGTTATTTTTAATGAGTTCAATCTAATAGTTCCTTCAGGGAAAAGTCTTGCCTTGGTAGGGCACAGTGGTTCTGGTAAAAGCTCAATAATCTCACTTATACTTAGATTTTATGATCCAACATCTGGGAAGGTGATGATTGATGGAAAAGATATCAAGAAAATGGATTTGAAATCCATAAGGAAGCATATCGGTCTAGTACAACAAGAACCAGCACTATTCGCGACATCAATTTATAAAAACATTCTTTATGGCAAAGAAGAAGCATCAGAATCAGAAGTGATTGAAGCAGCTAAACTAGCCAATGCTCATAATTTCATAAGTGCACTTCCTGAAGGCTACTCAACAAAAGCAGGTGAGAGAGGAGTTCAACTATCTGGTGGCCAAAAACAAAGAGTAGCCATTGCAAGAGCTGTTTTGAGAAACCCGAAAATTTTACTTCTTGATGAAGCCACAAGTGCACTCGATGTAGAGTCGGAGCGCATTGTACAACAAGCTTTAGACAAGTTGATGCAAAATAGAACAACAATTATTGTGGCACATAGGCTATCTACAATAAGAAATGCAGATCAAATATCAGTTTTGCAGGATGGAAAGATAATTGAGCAAGGTACTCATTCAAGTCTTATGGAAAATATAGATGGAGCTTATTTCAAATTAGCCAGCTTACAACAACAACCACATGTACATAATACATGA 3675 0.382 MSRRGSRGKKVSLLKLFSFADFYDYVLMAVGSVGACIHGASVPVFFIFFGKIINAIGLAYLYPKEASHQVAKYALDFLYLSIVILFSSWAEVACWMHTGERQVAKMRMAYLKSMLNQDISLFDTESSTGDVISSITSDIIVVQEALSEKVGNFMHYISRFIAGFIIGFFRVWQISIVTLAIVPLIGIAGGLYAYVTFGLIAKVRKSYLRAGEIAQEVIGNVRTVQAFGGEQRAVISYKVALRNTYKNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIIVHKGIANGGVAFTTMLNVVISGLSLGQATPDIAAFIRAKTAAYLIFEMIERDIVSKKTSKACRKLKKIDGHIQFINVCFTYPSRPDVAIFNNLYLEIPSGKVLALVGGSGSGKSTIISLIERFYEPISGQILLDKNDIKELDLKWLRQQIGLVNQEPALFATSIRENILYGKNDATPEELNRALELSNAHSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMIGRTTVIVAHRLSTIRNADMIAVVERGSIVETGNHEELISNSNGVYVSLVQGHPSTDPCLGQSSSIKNLVETSHTSTIGSSFRSDKDSTGACADEAGSVEKPRHVSLIRLYSMIGPYWSYGVFGTLAAFTTGALMPLFALGISHALVSYYMDWDSTQHEVKKIAFLFCGAAIVAITAYTIEHLSFGIMGERLTLRVREIMISAILKNEIGWFDDTRNSSTMLSSRLETDATLLKTIVVDRSTILLQNVGLVVTSFIIAFILNWRITLVVLATYPLIISGHIGEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEEKIIGLYADELVEPSKRSFKRGQIAGIFYGISQFFIFSSYGIALWYGSLLVEKDLSTFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVSSIFDMIDRKSGIMYNVGEELMTVEGTIELRRINFSYPSRPDIVIFNEFNLIVPSGKSLALVGHSGSGKSSIISLILRFYDPTSGKVMIDGKDIKKMDLKSIRKHIGLVQQEPALFATSIYKNILYGKEEASESEVIEAAKLANAHNFISALPEGYSTKAGERGVQLSGGQKQRVAIARAVLRNPKILLLDEATSALDVESERIVQQALDKLMQNRTTIIVAHRLSTIRNADQISVLQDGKIIEQGTHSSLMENIDGAYFKLASLQQQPHVHNT 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02067 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 971 1216 IPR027417 -
Trre16g02067 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 588 IPR027417 -
Trre16g02067 1224 SUPERFAMILY ABC transporter transmembrane region 16 322 IPR036640 GO:0005524|GO:0016020
Trre16g02067 1224 ProSitePatterns ABC transporters family signature. 1117 1131 IPR017871 GO:0005524|GO:0016887
Trre16g02067 1224 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 29 317 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g02067 1224 FunFam ABC transporter B family member 1 342 591 - -
Trre16g02067 1224 FunFam ABC transporter B family member 19 968 1217 - -
Trre16g02067 1224 ProSitePatterns ABC transporters family signature. 491 505 IPR017871 GO:0005524|GO:0016887
Trre16g02067 1224 Pfam ABC transporter transmembrane region 660 931 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g02067 1224 Pfam ABC transporter transmembrane region 33 301 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g02067 1224 CDD ABC_6TM_Pgp_ABCB1_D1_like 28 325 - -
Trre16g02067 1224 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 659 945 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g02067 1224 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 980 1214 IPR003439 GO:0005524
Trre16g02067 1224 Pfam ABC transporter 997 1145 IPR003439 GO:0005524
Trre16g02067 1224 Pfam ABC transporter 371 519 IPR003439 GO:0005524
Trre16g02067 1224 PANTHER ABC TRANSPORTER B FAMILY 8 588 IPR039421 -
Trre16g02067 1224 Gene3D ABC transporter type 1, transmembrane domain 15 947 IPR036640 GO:0005524|GO:0016020
Trre16g02067 1224 Gene3D - 342 604 IPR027417 -
Trre16g02067 1224 CDD ABC_6TM_Pgp_ABCB1_D2_like 648 963 - -
Trre16g02067 1224 CDD ABC_MTABC3_MDL1_MDL2 978 1216 - -
Trre16g02067 1224 SUPERFAMILY ABC transporter transmembrane region 640 959 IPR036640 GO:0005524|GO:0016020
Trre16g02067 1224 CDD ABC_MTABC3_MDL1_MDL2 352 588 - -
Trre16g02067 1224 Gene3D - 969 1223 IPR027417 -
Trre16g02067 1224 SMART AAA_5 379 571 IPR003593 GO:0016887
Trre16g02067 1224 SMART AAA_5 1005 1191 IPR003593 GO:0016887
Trre16g02067 1224 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 352 588 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02067 Trre-Chr16 16610574 16617649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02067 9 1222 Calmodulin-binding Proteins AT2G36910 50.281 0.0 1215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02067 K05658 - gmx:100819045 1928.29