Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre16g02067 | ATGTCAAGACGAGGTTCAAGGGGGAAAAAGGTTTCATTGCTCAAGCTTTTCTCATTTGCTGACTTCTATGATTATGTCTTGATGGCCGTTGGATCTGTTGGTGCATGCATTCATGGTGCATCGGTGCCTGTTTTCTTTATCTTCTTTGGAAAAATTATTAATGCCATAGGTTTGGCTTATCTTTATCCTAAAGAAGCTTCTCACCAAGTTGCCAAGTATGCGTTGGATTTTCTGTATCTAAGTATAGTAATATTGTTTTCATCATGGGCAGAGGTAGCTTGTTGGATGCATACTGGGGAACGTCAAGTAGCAAAGATGAGAATGGCATATTTAAAGTCAATGTTGAATCAAGATATAAGTCTTTTTGATACTGAGTCATCAACTGGAGATGTTATTTCTTCTATTACAAGTGACATCATAGTTGTTCAAGAAGCATTATCTGAGAAGGTTGGGAACTTTATGCACTACATAAGCCGATTTATAGCAGGATTTATCATCGGCTTTTTCAGAGTTTGGCAGATCAGTATAGTGACACTTGCTATTGTTCCTTTGATTGGTATTGCTGGAGGTCTTTATGCATATGTGACATTCGGGCTTATTGCAAAAGTTCGTAAATCATATCTTAGGGCAGGTGAAATCGCTCAGGAGGTGATAGGAAATGTAAGAACCGTACAAGCATTTGGAGGAGAACAAAGAGCGGTGATATCATACAAAGTGGCTCTGAGGAACACGTATAAGAATGGTCGAAAAGCAGGTTTAGCAAAGGGTCTAGGACTAGGCTCTATGCATTGTGTCCTTTTTCTATCATGGGCTTTGCTTGTTTGGTTTACAAGTATTATTGTTCACAAGGGCATCGCCAATGGTGGAGTCGCTTTCACTACCATGCTCAATGTCGTTATCTCTGGCCTGTCACTTGGGCAGGCAACACCAGACATTGCGGCATTTATTAGAGCAAAGACAGCAGCTTATCTCATTTTCGAGATGATAGAGAGAGACATAGTTAGCAAAAAAACCTCAAAAGCTTGTCGAAAATTAAAGAAAATAGATGGTCACATACAATTTATTAATGTCTGTTTCACTTATCCATCTCGTCCTGATGTTGCTATTTTCAACAATCTTTATCTTGAAATTCCTTCAGGTAAAGTTTTGGCACTTGTAGGAGGGAGTGGTTCAGGAAAAAGTACAATTATATCATTAATCGAGCGTTTCTATGAACCAATTTCTGGTCAAATTCTGTTAGATAAGAATGATATAAAAGAACTTGATCTTAAATGGCTTAGACAACAAATTGGACTAGTTAATCAAGAGCCTGCACTTTTTGCTACAAGCATAAGGGAGAATATATTGTATGGTAAAAATGATGCCACTCCTGAGGAACTAAACCGTGCTTTGGAACTTTCTAATGCTCACTCTTTCATCAACAATCTTCCTGATGGATTAGATACTCAGGTTGGTGAGAGAGGAATACAATTATCAGGGGGACAAAAGCAGAGAATTGCAATATCTCGTGCTATAGTTAAAAATCCATCAATCCTTTTATTAGATGAAGCAACTAGTGCTCTAGACGCGGAGTCTGAGAAAAGTGTACAAGAAGCTCTTGATCGTGTCATGATTGGTAGAACAACTGTGATAGTGGCACATAGACTTTCCACCATTAGGAATGCAGATATGATAGCTGTTGTTGAACGAGGGAGCATCGTGGAAACTGGAAATCATGAAGAGCTCATTTCCAACTCAAATGGTGTATATGTATCTCTTGTTCAAGGCCACCCTTCTACGGATCCTTGCTTGGGACAGTCATCAAGCATAAAGAACTTGGTAGAAACATCCCATACATCAACTATTGGTAGCAGTTTTCGTTCGGATAAAGACTCTACTGGTGCATGTGCTGATGAAGCAGGAAGTGTTGAAAAGCCGAGACATGTTTCATTAATAAGATTATATTCAATGATTGGTCCTTATTGGTCTTATGGAGTTTTTGGAACCTTAGCTGCTTTTACTACTGGTGCTCTTATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTTGTATCATATTATATGGATTGGGATAGCACACAACATGAAGTGAAAAAAATTGCTTTCCTCTTCTGTGGAGCAGCAATTGTAGCTATCACTGCCTATACCATTGAACATCTTTCTTTCGGAATCATGGGCGAACGACTTACCCTTCGTGTCAGGGAAATTATGATTTCTGCTATTTTGAAGAATGAAATCGGTTGGTTTGATGATACGAGAAACTCGAGTACTATGCTTTCATCACGTTTAGAGACTGATGCAACTTTGTTAAAAACAATAGTGGTGGACCGTTCTACAATTCTTTTGCAGAATGTTGGCCTAGTTGTTACTTCATTTATTATTGCATTCATTTTGAACTGGAGGATAACACTTGTTGTCTTGGCAACATATCCTTTGATCATTAGTGGTCACATTGGTGAGAAACTTTTCATGCAAGGATTTGGTGGCAACCTAAGCAAAGCATATCTAAAAGCAAACATGTTAGCTGGGGAGGCTGTTAGTAATATAAGGACTGTGGCTGCATTTTGTGCAGAAGAAAAGATTATTGGTCTTTATGCTGATGAGCTTGTTGAGCCTTCCAAACGTTCATTCAAACGAGGCCAAATTGCTGGCATATTTTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCATAGCCTTGTGGTATGGATCCTTGTTGGTTGAAAAGGATCTTTCTACCTTTAAATCAATCATGAAGTCATTTATGGTTTTAATAGTAACAGCATTGGCTATGGGGGAAACATTGGCACTTGCACCAGACCTTTTGAAAGGGAATCAAATGGTTTCATCAATATTTGATATGATAGATAGAAAGTCAGGAATAATGTATAATGTTGGAGAAGAGTTGATGACAGTGGAAGGAACAATTGAGCTAAGAAGGATCAATTTTAGCTATCCTTCAAGACCAGACATTGTTATTTTTAATGAGTTCAATCTAATAGTTCCTTCAGGGAAAAGTCTTGCCTTGGTAGGGCACAGTGGTTCTGGTAAAAGCTCAATAATCTCACTTATACTTAGATTTTATGATCCAACATCTGGGAAGGTGATGATTGATGGAAAAGATATCAAGAAAATGGATTTGAAATCCATAAGGAAGCATATCGGTCTAGTACAACAAGAACCAGCACTATTCGCGACATCAATTTATAAAAACATTCTTTATGGCAAAGAAGAAGCATCAGAATCAGAAGTGATTGAAGCAGCTAAACTAGCCAATGCTCATAATTTCATAAGTGCACTTCCTGAAGGCTACTCAACAAAAGCAGGTGAGAGAGGAGTTCAACTATCTGGTGGCCAAAAACAAAGAGTAGCCATTGCAAGAGCTGTTTTGAGAAACCCGAAAATTTTACTTCTTGATGAAGCCACAAGTGCACTCGATGTAGAGTCGGAGCGCATTGTACAACAAGCTTTAGACAAGTTGATGCAAAATAGAACAACAATTATTGTGGCACATAGGCTATCTACAATAAGAAATGCAGATCAAATATCAGTTTTGCAGGATGGAAAGATAATTGAGCAAGGTACTCATTCAAGTCTTATGGAAAATATAGATGGAGCTTATTTCAAATTAGCCAGCTTACAACAACAACCACATGTACATAATACATGA | 3675 | 0.382 | MSRRGSRGKKVSLLKLFSFADFYDYVLMAVGSVGACIHGASVPVFFIFFGKIINAIGLAYLYPKEASHQVAKYALDFLYLSIVILFSSWAEVACWMHTGERQVAKMRMAYLKSMLNQDISLFDTESSTGDVISSITSDIIVVQEALSEKVGNFMHYISRFIAGFIIGFFRVWQISIVTLAIVPLIGIAGGLYAYVTFGLIAKVRKSYLRAGEIAQEVIGNVRTVQAFGGEQRAVISYKVALRNTYKNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIIVHKGIANGGVAFTTMLNVVISGLSLGQATPDIAAFIRAKTAAYLIFEMIERDIVSKKTSKACRKLKKIDGHIQFINVCFTYPSRPDVAIFNNLYLEIPSGKVLALVGGSGSGKSTIISLIERFYEPISGQILLDKNDIKELDLKWLRQQIGLVNQEPALFATSIRENILYGKNDATPEELNRALELSNAHSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMIGRTTVIVAHRLSTIRNADMIAVVERGSIVETGNHEELISNSNGVYVSLVQGHPSTDPCLGQSSSIKNLVETSHTSTIGSSFRSDKDSTGACADEAGSVEKPRHVSLIRLYSMIGPYWSYGVFGTLAAFTTGALMPLFALGISHALVSYYMDWDSTQHEVKKIAFLFCGAAIVAITAYTIEHLSFGIMGERLTLRVREIMISAILKNEIGWFDDTRNSSTMLSSRLETDATLLKTIVVDRSTILLQNVGLVVTSFIIAFILNWRITLVVLATYPLIISGHIGEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEEKIIGLYADELVEPSKRSFKRGQIAGIFYGISQFFIFSSYGIALWYGSLLVEKDLSTFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVSSIFDMIDRKSGIMYNVGEELMTVEGTIELRRINFSYPSRPDIVIFNEFNLIVPSGKSLALVGHSGSGKSSIISLILRFYDPTSGKVMIDGKDIKKMDLKSIRKHIGLVQQEPALFATSIYKNILYGKEEASESEVIEAAKLANAHNFISALPEGYSTKAGERGVQLSGGQKQRVAIARAVLRNPKILLLDEATSALDVESERIVQQALDKLMQNRTTIIVAHRLSTIRNADQISVLQDGKIIEQGTHSSLMENIDGAYFKLASLQQQPHVHNT | 1224 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre16g02067 | 1224 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 971 | 1216 | IPR027417 | - | |
Trre16g02067 | 1224 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 344 | 588 | IPR027417 | - | |
Trre16g02067 | 1224 | SUPERFAMILY | ABC transporter transmembrane region | 16 | 322 | IPR036640 | GO:0005524|GO:0016020 | |
Trre16g02067 | 1224 | ProSitePatterns | ABC transporters family signature. | 1117 | 1131 | IPR017871 | GO:0005524|GO:0016887 | |
Trre16g02067 | 1224 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 29 | 317 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre16g02067 | 1224 | FunFam | ABC transporter B family member 1 | 342 | 591 | - | - | |
Trre16g02067 | 1224 | FunFam | ABC transporter B family member 19 | 968 | 1217 | - | - | |
Trre16g02067 | 1224 | ProSitePatterns | ABC transporters family signature. | 491 | 505 | IPR017871 | GO:0005524|GO:0016887 | |
Trre16g02067 | 1224 | Pfam | ABC transporter transmembrane region | 660 | 931 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre16g02067 | 1224 | Pfam | ABC transporter transmembrane region | 33 | 301 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre16g02067 | 1224 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 28 | 325 | - | - | |
Trre16g02067 | 1224 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 659 | 945 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre16g02067 | 1224 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 980 | 1214 | IPR003439 | GO:0005524 | |
Trre16g02067 | 1224 | Pfam | ABC transporter | 997 | 1145 | IPR003439 | GO:0005524 | |
Trre16g02067 | 1224 | Pfam | ABC transporter | 371 | 519 | IPR003439 | GO:0005524 | |
Trre16g02067 | 1224 | PANTHER | ABC TRANSPORTER B FAMILY | 8 | 588 | IPR039421 | - | |
Trre16g02067 | 1224 | Gene3D | ABC transporter type 1, transmembrane domain | 15 | 947 | IPR036640 | GO:0005524|GO:0016020 | |
Trre16g02067 | 1224 | Gene3D | - | 342 | 604 | IPR027417 | - | |
Trre16g02067 | 1224 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 648 | 963 | - | - | |
Trre16g02067 | 1224 | CDD | ABC_MTABC3_MDL1_MDL2 | 978 | 1216 | - | - | |
Trre16g02067 | 1224 | SUPERFAMILY | ABC transporter transmembrane region | 640 | 959 | IPR036640 | GO:0005524|GO:0016020 | |
Trre16g02067 | 1224 | CDD | ABC_MTABC3_MDL1_MDL2 | 352 | 588 | - | - | |
Trre16g02067 | 1224 | Gene3D | - | 969 | 1223 | IPR027417 | - | |
Trre16g02067 | 1224 | SMART | AAA_5 | 379 | 571 | IPR003593 | GO:0016887 | |
Trre16g02067 | 1224 | SMART | AAA_5 | 1005 | 1191 | IPR003593 | GO:0016887 | |
Trre16g02067 | 1224 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 352 | 588 | IPR003439 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre16g02067 | Trre-Chr16 | 16610574 | 16617649 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre16g02067 | 9 | 1222 | Calmodulin-binding Proteins | AT2G36910 | 50.281 | 0.0 | 1215 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre16g02067 | K05658 | - | gmx:100819045 | 1928.29 |