Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02059 ATGAGTTCCGCTCAGGAGATTGTGTATGACGACCTTATCAATGTTGATTTAACTAAGGAACATGGAGTTTACAAAGTTAGGGTTCTTAGGAAGTGGATGGTTGTTGATTACTCCAGGACCAGTATTGTTGGTTGTGTTAATTTGGTTTTAATTGACAAACATGGGATTAAGATCCATGCTTATATTCCTCATATTGTGTTTGCTATTTTTGATGAACAAGTTCAGGAGGGAAGGGTCTATCGAATTTCTGGGGTTTCGGTGAAGTTCAACTTTGGGAGTGTTGTAGCAAGTTTCCATAGATACAAGTTTGTTTTCACTGAAAGAACTGTTGTTGATCCTTCACCCAACTGCTATTTACCCACTCATGGACTATCGTTGATTGGAACTGAAGATGTTCACAACAAGAAGAATACCTTTAGGCACTTGGTTGATGTTATTGGTGTTGTCACTTCTGTTGTTCATGACAAGAACTTTTATCGTAATGGAAGGGTTACTCAATCTGTAACATTTAAGCTCAATGATCCCTGGAAATCTTTTTTGTGTGAGTTGTCTGATGAACTTGTGGATGAATTTCGTGATCGTTTGAGACATTGTCCTGCCGGACTACCTTTGGTTGTGTTGCAGTTTGTTGAAGTTGGTAGATCTCACGGAGCTATTTTAGTTGAGGGTGTTAATGGAGTTACAAGGATGTTTGTTGATCCATCGATTCCTGAAGCTACCAAGTTTAGGAACTGGATGGTTGATTATCTTGGTCGAAGCTTAGATTATGATGGTGTGTTTCGTTCAAGCTGTCGGTCATCTGCTTCACATACCCTCGATTTTATCAAAGACTATCCAGTCAAAACCCTTGCTGAGTTGCAGAATGATCCACAGTTGGGAATATTTGTGGTGAATGCTAGGATTTGTGGCATTGTTAACTTTGATCCTTGGTGGTATCCTATCTGTGATTGTCCTAGGATTTACCAGAAGTACCTGGGATCATTTCATTGTACTAAGTGCAGCGCATCTAAATTCATAGCTTCTCCCAAGGTCAAATTAACATTTGAGGTCAATGATTCTACTGGGTATGGTCTTTTTAGAGCATTTGACCACATTATGCTTAATGTGGCTGTGGTTAACTGTCATTCTCAAGGAATTAATTCTGAGTCTTTCTACAAGGCTTTTGATGAAGTGATGGGAAAGAGTATCATGTTCATTGTTAAGAAAGTTTCTCATGAACCTGATTTTATTGATAATGCTATTGAGGTTCTTCGAGTTAGTGATGACCCTACTTTGATTGAATATTTCGCTGTCAGAGGTGTCTTCAATGTTCCTTCAAAGGTTGTGAAGAAGAGTGTTGGTTGTGTTGGAAAGCAGGTTGCAATCGTTGATAATGGTCCTGGTACTACTACTACTACTGAAGAGTTGATGAGGCTGTATCTTTCCCCATTTGACAACAATGACAGTAGTTCAAATGCACCCGTTTCCTGCTCTTCAAATTTTAAGCGCCAAAGAATTGTTTAG 1503 0.3906 MSSAQEIVYDDLINVDLTKEHGVYKVRVLRKWMVVDYSRTSIVGCVNLVLIDKHGIKIHAYIPHIVFAIFDEQVQEGRVYRISGVSVKFNFGSVVASFHRYKFVFTERTVVDPSPNCYLPTHGLSLIGTEDVHNKKNTFRHLVDVIGVVTSVVHDKNFYRNGRVTQSVTFKLNDPWKSFLCELSDELVDEFRDRLRHCPAGLPLVVLQFVEVGRSHGAILVEGVNGVTRMFVDPSIPEATKFRNWMVDYLGRSLDYDGVFRSSCRSSASHTLDFIKDYPVKTLAELQNDPQLGIFVVNARICGIVNFDPWWYPICDCPRIYQKYLGSFHCTKCSASKFIASPKVKLTFEVNDSTGYGLFRAFDHIMLNVAVVNCHSQGINSESFYKAFDEVMGKSIMFIVKKVSHEPDFIDNAIEVLRVSDDPTLIEYFAVRGVFNVPSKVVKKSVGCVGKQVAIVDNGPGTTTTTEELMRLYLSPFDNNDSSSNAPVSCSSNFKRQRIV 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02059 500 Gene3D - 267 419 IPR012340 -
Trre16g02059 500 Gene3D - 119 250 IPR012340 -
Trre16g02059 500 Pfam Domain of unknown function DUF223 48 114 IPR003871 -
Trre16g02059 500 CDD RPA1_DBD_B_like 144 238 - -
Trre16g02059 500 SUPERFAMILY Nucleic acid-binding proteins 139 246 IPR012340 -
Trre16g02059 500 SUPERFAMILY Nucleic acid-binding proteins 25 116 IPR012340 -
Trre16g02059 500 Gene3D - 12 113 IPR012340 -
Trre16g02059 500 MobiDBLite consensus disorder prediction 481 500 - -
Trre16g02059 500 SUPERFAMILY Nucleic acid-binding proteins 278 402 IPR012340 -
Trre16g02059 500 CDD RPA1_DBD_A_like 25 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02059 Trre-Chr16 16539829 16542862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02059 25 380 Core DNA Replication Machinery Family AT5G08020 23.181 8.29e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02059 K07466 - tpra:123914763 471.855