Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02058 ATGGATTACAACAGAGACGGCAACGTCGTTCAAATCATCACCTCCGGCGGAGGTGGTGCTGATAGCTGGTCAACCGACCAGGCCGATTGGGCAACGGAAGACGAATATCGATACTGGAACGGTAACGAACCCGGCGAAACCACGCCATCTTCAAACTCAAATTCCGAGAGACAACAACGGTCAGGAAGCGAACCGCCGAGCAAGAAAACAAGAAGCAATTCACAAGACGGTGGATCGAATCGTGCAAAGGCAATCGGGAAAATGTTCTTTAAGACGAAACTGTGTTGCAAGTTTCGTGTGGGAACTTGTCCTTATATAACTAACTGTAATTTTGCGCACAGTGTTGAGGAGCTTCGACGGCCGCCGGCAAATTGGCAGGAGATTGTGGCTGCTCATGAGGAAGAGAGGAATGTGGTTGAGCAGCCGAGGGAAGAGTTTCAGATTCCGACTGTCGGTTCGAGTACTTTTGTAGGGGAGAGTATGAATAATAGGTCTTATAAGGGTAGACATTGTAAGAAATTTTATACTGAAGAAGGTTGTCCTTATGGTGATAGTTGCACTTTTCTTCATGATGAACAATCAAAGAATCGCGAAAGTGTTGCTATAAGTTTAGGTCCTGGTGGTTATGGTGGTGGTGGTGGTGGTGGAGGTGGAGGTGGTAGTATTGGTAGTGGCGGAGGCGGCGGCGGTGGTGGTAGTGGCGTTGTTGTTGTTGCAGCCGGTGCAGCTGCTGGGAATGGACCTAATTTGAAGCCTTCAAATTGGAAAACTAGGATTTGTAATAAGTGGGAGATGACTGGTTATTGTCCCTTTGGTAACAAATGTCATTTTGCTCATGGTGCTACAGAATTACACAGATATGGAGGTGGGCTTATGGACGGAGAAAACAGAGACACTGCTTCTGCTGTTGCGTCCGATGCAAAACAGGGTGTATCATCAAAAAATCATGCTGATAATGTGGTTGCATCAACTCCTCCTATTGGCCAATCAGATATTTATCATATTGGAGTCCCTTCACAGAGGCCTTCCATTGTGAGTCAGAGGCCAGGACAGAGAGCTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATACGGTGATTGGATTGATGACTTTGAGTAG 1128 0.4654 MDYNRDGNVVQIITSGGGGADSWSTDQADWATEDEYRYWNGNEPGETTPSSNSNSERQQRSGSEPPSKKTRSNSQDGGSNRAKAIGKMFFKTKLCCKFRVGTCPYITNCNFAHSVEELRRPPANWQEIVAAHEEERNVVEQPREEFQIPTVGSSTFVGESMNNRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGGGSIGSGGGGGGGGSGVVVVAAGAAAGNGPNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMDGENRDTASAVASDAKQGVSSKNHADNVVASTPPIGQSDIYHIGVPSQRPSIVSQRPGQRAHQKWKGPDKISRIYGDWIDDFE 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02058 375 SUPERFAMILY CCCH zinc finger 87 120 IPR036855 GO:0046872
Trre16g02058 375 MobiDBLite consensus disorder prediction 43 80 - -
Trre16g02058 375 ProSiteProfiles Zinc finger C3H1-type profile. 254 282 IPR000571 GO:0046872
Trre16g02058 375 MobiDBLite consensus disorder prediction 33 81 - -
Trre16g02058 375 SUPERFAMILY CCCH zinc finger 251 285 IPR036855 GO:0046872
Trre16g02058 375 FunFam Zinc finger CCCH domain-containing protein 85 120 - -
Trre16g02058 375 ProSiteProfiles Zinc finger C3H1-type profile. 165 193 IPR000571 GO:0046872
Trre16g02058 375 FunFam Zinc finger, CCCH-type 158 197 - -
Trre16g02058 375 Gene3D - 86 120 - -
Trre16g02058 375 Gene3D - 249 286 - -
Trre16g02058 375 FunFam zinc finger CCCH domain-containing protein 15-like 249 287 - -
Trre16g02058 375 Pfam CCCH-type zinc finger 169 191 IPR041367 -
Trre16g02058 375 SMART c3hfinal6 89 115 IPR000571 GO:0046872
Trre16g02058 375 SMART c3hfinal6 165 192 IPR000571 GO:0046872
Trre16g02058 375 SMART c3hfinal6 254 281 IPR000571 GO:0046872
Trre16g02058 375 ProSiteProfiles Zinc finger C3H1-type profile. 89 116 IPR000571 GO:0046872
Trre16g02058 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 255 280 IPR000571 GO:0046872
Trre16g02058 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 114 IPR000571 GO:0046872
Trre16g02058 375 Gene3D - 157 204 - -
Trre16g02058 375 PANTHER CCCH ZINC FINGER/TIS11-RELATED 247 286 IPR045877 GO:0003729
Trre16g02058 375 SUPERFAMILY CCCH zinc finger 162 193 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02058 Trre-Chr16 16530783 16533629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02058 256 284 C3H Transcription Factor Family AT1G68200 62.069 3.58e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre16g02058 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02058 - - gmx:100788208 551.592