Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02056 ATGGCTTTGGAAACACTTTCATCATGTAATGATTTTACAAATTTCATTATCTATGACACAATTTCTGCAACTCCATTTAGTAGTAGTAATACTACAGAGTACTCTGGTTTCATGGAAAATACAATGAACAACTATGAGGAAAATATTCATCATGAGGCTACAATATTTGATCATAGTAACTTTTCTATGATGAATAACAGAAAAAGGCAATTAATGGAACAAGAAGAAACAATGAAGGAGATGAATAATAATAATAATAATAATAATAATCAAGTGGTTCAGAGGAAGAAGAGGAGAAGAAAACCAAGAGTTTGTAAGAACAAAGAAGAAGCTGAGACACAAAGAATCACACACATTACTGTTGAAAGAAACCGTAGAAAGCAAATGAATGAACATCTTGCTGTACTTCGTTCTCTCATGCCTGAATCCTATGTTCAAAGGGGTGACCAAGCCTCAATAGTAGGAGGTGCCATAGAGTTTGTGAAGGAGCTAGAACATCTCTTACAATCACTTGAAGCTAGAAAGGTACAACTATTACAACAAGAATTAGCACAACAAAGCAATAATAATATTGAAGAAACAAGCAATGTTTCAAAACAAATAATGAAACCACCTTTTGCACAATTTTTTGTGTATCCTCAATATACATGGTCCCAAACACCTAACAAATACACATCCAAGACCAAAGCTTCCATAGCTGATATCGAGGTTACATTAATCGAGACTCATGCAAACCTTAGAATTCTCACAAGGACAAGACCAGGACAATTAACTAAATTAGTTGCTGGTTTTCAATCACTTTTCCTCACAATTCTACATCTCAATGTCACTACTATACAACCATTGGTTTTCTACTCTATAAGTGCCAAGGTTGAAGAAGGATTCCAACTTGGTTCAGTAGATGGCATTGCAACAGCAGTTCATCATTTACTTGGAAGAATTGATGAAGAAACTTCACTAATTTGCTGTTAA 972 0.3426 MALETLSSCNDFTNFIIYDTISATPFSSSNTTEYSGFMENTMNNYEENIHHEATIFDHSNFSMMNNRKRQLMEQEETMKEMNNNNNNNNNQVVQRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKVQLLQQELAQQSNNNIEETSNVSKQIMKPPFAQFFVYPQYTWSQTPNKYTSKTKASIADIEVTLIETHANLRILTRTRPGQLTKLVAGFQSLFLTILHLNVTTIQPLVFYSISAKVEEGFQLGSVDGIATAVHHLLGRIDEETSLICC 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02056 323 PANTHER MAX DIMERIZATION, MAD 59 317 - -
Trre16g02056 323 Pfam Helix-loop-helix DNA-binding domain 114 165 IPR011598 GO:0046983
Trre16g02056 323 Coils Coil 64 91 - -
Trre16g02056 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 164 IPR011598 GO:0046983
Trre16g02056 323 SMART finulus 119 170 IPR011598 GO:0046983
Trre16g02056 323 MobiDBLite consensus disorder prediction 81 111 - -
Trre16g02056 323 Coils Coil 161 196 - -
Trre16g02056 323 Gene3D - 105 190 IPR036638 GO:0046983
Trre16g02056 323 CDD bHLH_AtFAMA_like 116 175 - -
Trre16g02056 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 182 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02056 Trre-Chr16 16513861 16516248 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02056 105 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 56.383 6.94e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g02056 HLH 5.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02056 - - pvu:PHAVU_003G284500g 417.157