Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02055 ATGAAGATTGAAGATTCTTGTAATACAATGGCTTTGGAAACACTTTCATCATGTAATGATTTTACAAATTTCATTATCTATGACACAATTTCTGCAACTCCATTTAGTAGTAGTAATACTACAGAGTACTCTGGTTTCATGGAAAATACAATGAACAACTATGAGGAAAATATTCATCATGAGGCTACAATATTTGATCATAGTAACTTTTCTATGATGAATAACAGAAAAAGGCAATTAATGGAACAAGAAGAAACAATGAAGGAGATGAATAATAATAATAATAATAATAATAATCAAGTGGTTCAGAGGAAGAAGAGGAGAAGAAAACCAAGAGTTTGTAAGAACAAAGAAGAAGCTGAGACACAAAGAATCACACACATTACTGTTGAAAGAAACCGTAGAAAGCAAATGAATGAACATCTTGCTGTACTTCGTTCTCTCATGCCTGAATCCTATGTTCAAAGGGGTGACCAAGCCTCAATAGTAGGAGGTGCCATAGAGTTTGTGAAGGAGCTAGAACATCTCTTACAATCACTTGAAGCTAGAAAGGTACAACTATTACAACAAGAATTAGCACAACAAAGCAATAATAATATTGAAGAAACAAGCAATGTTTCAAAACAAATAATGAAACCACCTTTTGCACAATTTTTTGTGTATCCTCAATATACATGGTCCCAAACACCTAACAAATACACATCCAAGACCAAAGCTTCCATAGCTGATATCGAGGTTACATTAATCGAGACTCATGCAAACCTTAGAATTCTCACAAGGACAAGACCAGGACAATTAACTAAATTAGTTGCTGGTTTTCAATCACTTTTCCTCACAATTCTACATCTCAATGTCACTACTATACAACCATTGGTTTTCTACTCTATAAGTGCCAAGGTTGAAGAAGGATTCCAACTTGGTTCAGTAGATGGCATTGCAACAGCAGTTCATCATTTACTTGGAAGAATTGATGAAGAAACTTCACTAATTTGCTGTTAA 999 0.3403 MKIEDSCNTMALETLSSCNDFTNFIIYDTISATPFSSSNTTEYSGFMENTMNNYEENIHHEATIFDHSNFSMMNNRKRQLMEQEETMKEMNNNNNNNNNQVVQRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKVQLLQQELAQQSNNNIEETSNVSKQIMKPPFAQFFVYPQYTWSQTPNKYTSKTKASIADIEVTLIETHANLRILTRTRPGQLTKLVAGFQSLFLTILHLNVTTIQPLVFYSISAKVEEGFQLGSVDGIATAVHHLLGRIDEETSLICC 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02055 332 Coils Coil 170 205 - -
Trre16g02055 332 Gene3D - 114 199 IPR036638 GO:0046983
Trre16g02055 332 CDD bHLH_AtFAMA_like 125 184 - -
Trre16g02055 332 SMART finulus 128 179 IPR011598 GO:0046983
Trre16g02055 332 Pfam Helix-loop-helix DNA-binding domain 123 174 IPR011598 GO:0046983
Trre16g02055 332 PANTHER MAX DIMERIZATION, MAD 68 326 - -
Trre16g02055 332 Coils Coil 73 100 - -
Trre16g02055 332 MobiDBLite consensus disorder prediction 90 120 - -
Trre16g02055 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 191 IPR036638 GO:0046983
Trre16g02055 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 173 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02055 Trre-Chr16 16513861 16516275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02055 114 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 56.383 7.86e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g02055 HLH 6.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02055 - - pvu:PHAVU_003G284500g 419.083