Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02054 ATGGCTCGTCCCGATTATCCGACAACATGGATTCCCTATATAAATAGCAAAGATTGTTCTCAAGGATTTTGTAGCATGTATTGTCCACAATGGTGCTACATAGTTTATGCTCCTCCACCACCACCACCTTTTCGATACCCTGATGATGATTCCAAACCATATTTTTCTCCTCTTGTTATTGCAATCATGGGAATTTTAGCCACAGCTTTTCTACTAATAACTTACTACACTCTAATAACCAAATACTGTGGTCATAGAGAATCTTCACACAGAAACAGCACTGACCAAGTTGATGAAATCCAACAAAATCGCCGCGAAAATTGTCAAGTTTCAACCTTTGGCTTAGATGATGCTCAAATAAAATCCATTGCAGTTTTTAAGTACAAAAAAAGAGACACTTTATTTGCTAGTACTGTCACTGATTGTTCTGTTTGTTTAAGTGAATTTCAAGATGATGAAAGTGTTAGACTTTTACCAATGTGTAATCATGTTTTTCATCTTCCTTGTATTGATACATGGCTTAAATCTAACTCTTCTTGTCCTCTATGTCGTTCGAACATACTCACTTTGAATGCTTCAACATTCCATGCTCCAATTCCAGCTACAGTTATAGAACTTCCTTCAAGAAATGAAATTTCATTAGAAGGTGAACAAATACTTGTGGAAGAAGCAATGGTTCATCATCATGGTAGGGTTGATTCAAAAACACCTTCATTGCGCGCTTATAGTGATTTATGTAATTTACAAGGAAGAGAAAGAATAATTGAAATTAGAGATGAAGTTTGTGAATCTATTGGAAGGTCAGTTTCTATGGATCATTCATTTCAAAATAGTTTTTCAATAAGTGATGTGTTAAATATGAATGAAGATGAAAATTCTGATGAAGGTTGTTCAATGGATCCTTGTTCATCAAAGAGATTACAAGGAGAAAGTAGTAATAAGTCAAGGTACAAAAGAAGGGTGTTGCATTGTGTTATGAGTCCAATTGCAATGAAGAGATCATTTTCTAATGGTAGATTTTCACTTGGTAAAATTGATAGAGGAAGAAGGCAGGGAATTTTGCCAGTTTGA 1071 0.3483 MARPDYPTTWIPYINSKDCSQGFCSMYCPQWCYIVYAPPPPPPFRYPDDDSKPYFSPLVIAIMGILATAFLLITYYTLITKYCGHRESSHRNSTDQVDEIQQNRRENCQVSTFGLDDAQIKSIAVFKYKKRDTLFASTVTDCSVCLSEFQDDESVRLLPMCNHVFHLPCIDTWLKSNSSCPLCRSNILTLNASTFHAPIPATVIELPSRNEISLEGEQILVEEAMVHHHGRVDSKTPSLRAYSDLCNLQGRERIIEIRDEVCESIGRSVSMDHSFQNSFSISDVLNMNEDENSDEGCSMDPCSSKRLQGESSNKSRYKRRVLHCVMSPIAMKRSFSNGRFSLGKIDRGRRQGILPV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02054 356 SMART ring_2 142 183 IPR001841 -
Trre16g02054 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 191 IPR013083 -
Trre16g02054 356 Pfam Ring finger domain 141 184 IPR001841 -
Trre16g02054 356 PANTHER RING-H2 FINGER PROTEIN ATL16 42 320 IPR044600 GO:0016567|GO:0016740
Trre16g02054 356 FunFam E3 ubiquitin-protein ligase ATL6 102 190 - -
Trre16g02054 356 CDD RING-H2_EL5-like 141 184 - -
Trre16g02054 356 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Trre16g02054 356 MobiDBLite consensus disorder prediction 290 314 - -
Trre16g02054 356 SUPERFAMILY RING/U-box 141 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02054 Trre-Chr16 16507049 16508119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02054 7 349 C3H Transcription Factor Family AT5G17600 37.158 6.39e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02054 - - vun:114176645 412.149