Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02052 ATGGCGTTCGAGAATCAAGACACTGTCCGTGAAATTAAGCCAAAAAACAGAAGAATCATGGGTGCTGGAGGACCTGATGATGAGGAAAATAGGTGGCCACCATGGTTGAAACCTCTGCTTAAAGAACGTTTCTTTGTTCAATGCAAGTTACATGCTGATTCACATAAGAGTGAGTGTAATATGTATTGTTTGGATTGTATGAATGGTGCTCTTTGCTCTCTCTGCCTCAATTATCACAAAGATCATCGTGCTATTCAGATAAGGAGGTCTTCATACCATGATGTGATTAGGGTGAATGAGATTCAGAAGGTTTTGGACATATCAGGAGTTCAAACTTATATCATCAACAGTGCAAGAGTTGTGTTCTTGAATGAGAGGCCTCAGCCAAGGCCTGGTAAAGGTGTCACCAATACTTGTGAAGTCTGCGAGCGCAGCCTTCTTGATTCCTTTCGATTCTGTTCTCTTGGTTGTAAGATTGTTGGAACTTCAATGAATTTCCAAAAGAAGAACAAGTCAGCTGCAATGATATCAGACTCAGAGGATTCATACAGCAGCAGTTGCAGCCATGGAAGACTGAAGAACATCAAGGTGCAAAGCTTCACTCCTTCAACACCACCACCGACTTCAGTTAATTACAGAACAGCCAAAAGAAGAAAGGGAATTCCACATCGCGCACCAATGGGAGGACTAGTCTTGCAATACTAA 705 0.4213 MAFENQDTVREIKPKNRRIMGAGGPDDEENRWPPWLKPLLKERFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLNYHKDHRAIQIRRSSYHDVIRVNEIQKVLDISGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSMNFQKKNKSAAMISDSEDSYSSSCSHGRLKNIKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPMGGLVLQY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02052 234 CDD Bbox2 48 87 - -
Trre16g02052 234 Pfam PLATZ transcription factor 88 159 IPR006734 -
Trre16g02052 234 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 26 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02052 Trre-Chr16 16459014 16461014 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre16g02052 PLATZ 2.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02052 - - mtr:11444793 456.832