Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02048 ATGGCTTCCGATAGCTTCACCGACAAAAACGCCGTGTTCAGAAAACTCAAAACCAAATCCGAAAATAAGACTTGTTTTGATTGCAATGCGAAGAATCCAACTTGGGCATCTGTAACGTATGGGATCTTCCTCTGCATTGATTGCTCTGCTGTTCATCGGAGTCTCGGTGTTCACGTCAGCTTTGTGAGATCTACAAACTTAGACTCATGGACTCCTGAGCAACTTAAAATGATGAGCTTTGGAGGAAACAGTAGGGCACAAGTTTTCTTTAGGCAGCATGGTTGGAACGGCGATGGTAAAGTAGAGGCAAAGTATACTTCCAGAGCTGCAGATTTGTATAAGCAACTGCTTTCAAAGGAAGTTGCCAAAAGCATGTCTGAGGAGGCTGCCTTGTCTTCATCACCTGCTGCTTCTTCGCAGTCTGCCCAAGGGGAAGGTGCTAATGGACTTCCTGATGTTAAGATAAATGAACTACCAAATGAAAAACCTGTAGAGAAGCCAGAAAAGACCGAGAGCACTTCTTCACCTAGAGCTTCATATACTGCAGTTTCCAATAATTTGAAGAAGCCTATTGGAGCCAAAAAAACTGTTAAGAGTGGGGGGCTCGGAGCCCGTAAGCTCACTAGAAAGCCAAGTGAGTCGCTCTACGAGCAGAAGCCTCAAGAACCACCTGCTCCAGTTTCATCAACAACAATTACCGACTTGCCTTCTGGGCCATCTCTAACATCTCGGTTTGAGTATACAGATGATGTCCAATCATCTGAATCGAATTCTGGAGGTTCTAATGTAATCAGTCATGTATCTGTACCAAAGTCATCAAGCTTCTTTTCTGACTTTGGAATGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCAAAAGTGCAAATTCAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTTGGAGATCAGAGCAAGGCCGGAGATGTGGATGCTCAAGCTACTCTATCAAAGTTTTCTGGTTCATCTTCCATTTCCAGTGCCGATCTTTTCGGTGACTCGAGAGATAACTCTGTTGATCTTGCTGCTAGTGATCTTATCAATCGAATATCTTTCCAGGCGCAACAGGATATTTCTTCCCTTAAGAACATAGCAGGAGAGACTGGGAAAAAACTCACCTCCTTGGCATCCTCCTTGATGACAGATCTTCAGGACCGAATTCTCTGA 1224 0.4363 MASDSFTDKNAVFRKLKTKSENKTCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHVSFVRSTNLDSWTPEQLKMMSFGGNSRAQVFFRQHGWNGDGKVEAKYTSRAADLYKQLLSKEVAKSMSEEAALSSSPAASSQSAQGEGANGLPDVKINELPNEKPVEKPEKTESTSSPRASYTAVSNNLKKPIGAKKTVKSGGLGARKLTRKPSESLYEQKPQEPPAPVSSTTITDLPSGPSLTSRFEYTDDVQSSESNSGGSNVISHVSVPKSSSFFSDFGMDSGFPKKSGPSSSKVQIQESDEARKKFSNAKSISSSQFFGDQSKAGDVDAQATLSKFSGSSSISSADLFGDSRDNSVDLAASDLINRISFQAQQDISSLKNIAGETGKKLTSLASSLMTDLQDRIL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02048 407 MobiDBLite consensus disorder prediction 158 172 - -
Trre16g02048 407 MobiDBLite consensus disorder prediction 286 307 - -
Trre16g02048 407 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Trre16g02048 407 Pfam Putative GTPase activating protein for Arf 12 111 IPR001164 GO:0005096
Trre16g02048 407 Gene3D Arf GTPase activating protein 1 140 IPR038508 -
Trre16g02048 407 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Trre16g02048 407 MobiDBLite consensus disorder prediction 131 146 - -
Trre16g02048 407 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Trre16g02048 407 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Trre16g02048 407 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Trre16g02048 407 MobiDBLite consensus disorder prediction 131 264 - -
Trre16g02048 407 CDD ArfGap_ArfGap2_3_like 8 123 - -
Trre16g02048 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 407 - -
Trre16g02048 407 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Trre16g02048 407 Coils Coil 400 407 - -
Trre16g02048 407 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Trre16g02048 407 MobiDBLite consensus disorder prediction 223 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02048 Trre-Chr16 16407008 16412705 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02048 13 90 C2H2 Transcription Factor Family AT4G21160 45.570 4.64e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02048 K12493 K11855 gmx:100785169 611.683