Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02047 ATGGCTTCCGATGGCTTCACTGATAAGAATCTTGTGTTCAGAAAACTCAAGATGAAGTCGGAAAATAAGATGTGTTTTGATTGTAATACGAAGAATCCAACATGGGCTTCTGTTACGTATGGGATCTTTCTGTGCATTGATTGCTCTGCTGTTCATCGAAGTCTCGGTGTTCATATTAGCTTCGTGAGATCTACAAACTTAGACTCATGGAGTCCTGAGCAACTAAAAATAATGAGTTTTGGAGGAAACAGTCGTGCACAGATTTTCTTTAAGCAACATGGTTGGACCGACGGTGGTAAAATAGAAGCAAAGTATACATCCAGAGCTGCAGAGTTGTACAGGCAAATGCTTTCAAAGGAAGTAGCTAAAAGTATGGCTGAGGAGGGAGGCTTGCCTTCATCACCCGTTGCTTCTCAGTCTTCTAATGGACTTTCTGATGTCAGGACCTATGAGGTACTGAAAGAAAATAATTTGGAGAAGGCAGAAAAGCCTGAGAGCACATCTTCTTCACCTAGAGCTTCACATACATTAGTATCAAATGCTTTGAAGAAGCCTATTGGTGGTAAAAAGCCTGGGAAGAGCGGGGGACTTGGTGCTCGTAAGCTCAATAAAAAGCCAAGTGAGTCTCTCTATGACCAGAAACCTGAAGAACCACCTGCTCCAGTTCCATCCACGACAAACAACAATGTGTCTGCCAGGCCATCTTTGACTTCTCGTTTTGAGTATGTAGATAATGTTCAATCATCTGAGTTGGATTCTGGAGGTTCAAATGTATACAATCACGCTTCTGCACCAAAGTCATCAAACTTCTTTGCAGACTTTGGAATGGACAGTGGTTTCCCTAAGAAATTTGGGTCAAACACCTCAAAAGTGCAAATTGAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCCATTTCGTCATCTCAATTTTTTGGAGACCAGAACAAGGCGAGAGATGCTGAAACTCGAGCTACTTTGACAAAGTTTTCAAGTTCATCTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCCGGAGATTCCTCCATCGATCTTGCTGCTAGCGATCTCATCAACCGATTATCTTTTCAGGCACAACAGGATATCTCTTCCCTCAAGAACATTGCTGGAGAGACTGGGAAAAAACTCAGCTCCTTGGCCTCCTCCTTGATGACAGATCTTCAGGACCGAATCCTCTAA 1209 0.426 MASDGFTDKNLVFRKLKMKSENKMCFDCNTKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKIMSFGGNSRAQIFFKQHGWTDGGKIEAKYTSRAAELYRQMLSKEVAKSMAEEGGLPSSPVASQSSNGLSDVRTYEVLKENNLEKAEKPESTSSSPRASHTLVSNALKKPIGGKKPGKSGGLGARKLNKKPSESLYDQKPEEPPAPVPSTTNNNVSARPSLTSRFEYVDNVQSSELDSGGSNVYNHASAPKSSNFFADFGMDSGFPKKFGSNTSKVQIEESDEARKKFSNAKSISSSQFFGDQNKARDAETRATLTKFSSSSAISSADLFGDSGDSSIDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLMTDLQDRIL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02047 402 CDD ArfGap_ArfGap2_3_like 8 123 - -
Trre16g02047 402 Gene3D Arf GTPase activating protein 3 138 IPR038508 -
Trre16g02047 402 MobiDBLite consensus disorder prediction 152 166 - -
Trre16g02047 402 MobiDBLite consensus disorder prediction 124 234 - -
Trre16g02047 402 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Trre16g02047 402 Pfam Putative GTPase activating protein for Arf 13 113 IPR001164 GO:0005096
Trre16g02047 402 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Trre16g02047 402 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Trre16g02047 402 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Trre16g02047 402 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Trre16g02047 402 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Trre16g02047 402 SUPERFAMILY ArfGap/RecO-like zinc finger 12 124 IPR037278 -
Trre16g02047 402 MobiDBLite consensus disorder prediction 133 147 - -
Trre16g02047 402 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02047 Trre-Chr16 16399610 16403959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02047 13 91 C2H2 Transcription Factor Family AT4G21160 43.750 1.41e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02047 K12493 K11855 gmx:100785169 647.121