Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02044 ATGGCTGAATACCGCTCACCACCGTTAAATATCTGGACAGACGACAACTCATCTGTCATGGAAGCTTTCATGAGCACTGCTGACCTCTCTAATTTATGGCTTCCAACACCACACTCCTCCGCATCAACAACCACACCAGGACCTGGACAACAACCACCACCACCACCACAACAACAGCAGCCTCTCTTCAATCAAGAGACTCTCCAACACCGTCTTCAAGCTTTAATCGAAGGTGCAAAACAGAATTGGACTTACGCCATCTTCTGGCAGCCGTCTTATGACTATTCTACCGCCACACCACTCCTCGGTTGGGGCGACGGATACTACAAAGGCGAAGATGATAAAGAAAAAGCTAAGAGAGTTACTAGAACCATTTCTCTTGACGAACAAGAGCATCGTAAACAAGTTCTACGTGAACTTAATGCTTTAATTTCCGGCTCGTCTGGCTCTGACGATGTTGTTGACGAAGATGTCACCGACACTGAGTGGTTCTTTCTCACGTCGATGACACAATCTTTCGTCAACAACGGCGGTTCATTGAGCCAGGCTTATTTTCATTCAGCTCCGGTGTGGATCGCCGGAGCTGATAGACTTTCTGGTTCGAACTGTGGACGAGCCCGTGAAGCACATGTCCACGGGATTCAAACCTTTGTATGTATACCAACACCGTCTTCAAACGGCGTCGTTGAGCTTGGTTCTACAGAGGTGATTCAATATAGCGCTGAGTTAATGGAAAAGGTTCGTGTTCTGTTTAATTTCAATAATCCTGAAGGAGGATCATGTCCGTTGAATTCTGTTGTAACTGGTCAAAGTGAGAACGATCCTTCCTCTGTTTGGCTCAACGATCTCTCCGGTTCTGCTGCGATTGAAATTCCCGCTACCACCGCTAACGCAACCGCTTCTGCAAAAACGTTGCCGTTTGAAACACACGGTTCTTCCAGTACTTTAACGGCAACAACAAGCGCCGTCGCTCAGCGTCAGAATCAGAACCAGAGTTTCTTCCCGAAGGAACTGAATTTTTCGAATTCACTGAAACCAGAATCCGGTGAGATTTTGAATTTCGGTGAAAGTAGAAAGAGTTCTTACAGCGCCGGTAACGGTAATTTCTTTGCTGCCGGTGAGGAAAACAGAAAGAGAAGATCTCCTGTGTCTAGAAGCAGCATTGACGACGGTATGCTTTCGTTCACTTCCGGCGTACTATTACCGGCTTCAAATATGAAATCCGGTGGTGGTGGAGGTGGAGGTGGAGATTCTGATAATTCGGATCTAGATGTTTCCGTTGTAAAAGAAGCTGACAGCAGCAGAGTACTGGAACAAGAGAAACGGCCACGAAAGCGAGGACGAAAACCGGCCAACGGAAGAGAAGAACCGTTGAATCACGTTGAAGCAGAAAGACAGAGAAGAGAAAAACTGAATCAAAGATTCTATGCTCTACGTGCAGTGGTTCCAAATGTTTCTAAAATGGACAAAGCTTCACTTCTTGGAGATGCAATTTCTTACATAAATGAATTGAAATCAAAGCTTCAAGGACTTGAATCATCAAAAGATGTGAAGATTATGGGATGGGATGCAGTGATTAGGATTGAATGTAGCAAGAAGAATCATCCTGCGGCGAAGTTGATGGCGGCATTGAAAGAATTAGATCTTGAAGTGAATCATGCTAGTGTGTCTGTAGTGAATGATTTGATGATTCAACAAGCTTCGGTTAACATGGGAAGTCAATTTTACACTAAGGAACAGCTTTCATCTGCTCTTTTTTCCAAAATTGGTGATGCACAATTAGATGAATGA 1791 0.4472 MAEYRSPPLNIWTDDNSSVMEAFMSTADLSNLWLPTPHSSASTTTPGPGQQPPPPPQQQQPLFNQETLQHRLQALIEGAKQNWTYAIFWQPSYDYSTATPLLGWGDGYYKGEDDKEKAKRVTRTISLDEQEHRKQVLRELNALISGSSGSDDVVDEDVTDTEWFFLTSMTQSFVNNGGSLSQAYFHSAPVWIAGADRLSGSNCGRAREAHVHGIQTFVCIPTPSSNGVVELGSTEVIQYSAELMEKVRVLFNFNNPEGGSCPLNSVVTGQSENDPSSVWLNDLSGSAAIEIPATTANATASAKTLPFETHGSSSTLTATTSAVAQRQNQNQSFFPKELNFSNSLKPESGEILNFGESRKSSYSAGNGNFFAAGEENRKRRSPVSRSSIDDGMLSFTSGVLLPASNMKSGGGGGGGGDSDNSDLDVSVVKEADSSRVLEQEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLESSKDVKIMGWDAVIRIECSKKNHPAAKLMAALKELDLEVNHASVSVVNDLMIQQASVNMGSQFYTKEQLSSALFSKIGDAQLDE 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02044 596 Gene3D - 448 518 IPR036638 GO:0046983
Trre16g02044 596 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 68 251 IPR025610 -
Trre16g02044 596 SMART finulus 461 510 IPR011598 GO:0046983
Trre16g02044 596 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 455 504 IPR011598 GO:0046983
Trre16g02044 596 MobiDBLite consensus disorder prediction 34 61 - -
Trre16g02044 596 FunFam Transcription factor bHLH13 448 520 - -
Trre16g02044 596 CDD bHLH_AtAIB_like 452 515 - -
Trre16g02044 596 Pfam Helix-loop-helix DNA-binding domain 459 504 IPR011598 GO:0046983
Trre16g02044 596 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 458 522 IPR036638 GO:0046983
Trre16g02044 596 PANTHER MYC 42 588 IPR045084 GO:0003700|GO:0006355
Trre16g02044 596 MobiDBLite consensus disorder prediction 428 465 - -
Trre16g02044 596 MobiDBLite consensus disorder prediction 404 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02044 Trre-Chr16 16359110 16361029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02044 1 590 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 51.364 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g02044 bHLH-MYC_N 3e-49 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02044 K13422 - gmx:100790854 695.271