Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02032 ATGTCTCCGCCACTGCTTGTTCCTGAAGAGGAACGGCAGAGCAACACCTCACCGGTAGCATCTGCTTCTCCGCAATCCTTGGACTGTTTTTCCCAAACTGGAGTTGGATTGAAAGAACGCAATTACCTCGGATTGTCGGATTGCTCATCGGTAGACAGTTCTACTGTCCCGAGCTTGTCTGATGAGAAAAAAGTAAACCTAAACTTGAAAGCTACAGAGTTAAGACTGGGACTTCCTGGATCCCAGTCGCCTGAAAGGGATCCAGATCTTTTTACATTGAGCTCGACAAAACTTGACGAGAAACCACTTTTCCCTTTGCTTCCAACGAAAGATGGAATCTGCTCATTGTCCCAGAAGAATGTGGTTTCAGGCAACAAAAGAGGTTTCGCTGACACAATAGATGTGTTCCCTGAGGCGAAATATAATGGTAATGCGCGTGTAAACATACTGCTATCGCCAAGACCTTCTGGAGCTCAGCCTACTACAGTTAAAGAAAAACCAGGCAAGGTGTTACAAGAGAGCCCTTGTGCAGCTAATGGAACTGGAGCTCCTATCAATGGCAGTGCACCGGCTGCTAAAGCACAAGTTGTCGGTTGGCCACCTATTAGATCATTTAGGAAAAACTCATTGGCCAATGCTTCGAAGAACAACGATGAAGTGGATGGAAAACCAGGTCCAGCTGCACTCTTTGTGAAGGTTAGCATGGACGGTGCTCCTTATCTTAGGAAGGTAGATCTAAGAAACTATACAACGTACCAGGAACTGTCTTCTGACCTTGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGTGGTTCGCATGGAGCTCCGGGAAAAGAAATGTTGAGCGAGAGCAAGTTGAAGGACTTCCTGCATGGCTCTGAATACGTGGTCACTTATGAAGATAAAGATGGCGACTGGATGCTTGTTGGAGATGTACCATGGGACATGTTCACTGACACATGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCAATTGGCTTAGCTCCAAGAGCCATGGAAAAATCCAAGAGCAGGAGCTAG 1047 0.4604 MSPPLLVPEEERQSNTSPVASASPQSLDCFSQTGVGLKERNYLGLSDCSSVDSSTVPSLSDEKKVNLNLKATELRLGLPGSQSPERDPDLFTLSSTKLDEKPLFPLLPTKDGICSLSQKNVVSGNKRGFADTIDVFPEAKYNGNARVNILLSPRPSGAQPTTVKEKPGKVLQESPCAANGTGAPINGSAPAAKAQVVGWPPIRSFRKNSLANASKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLGQCGSHGAPGKEMLSESKLKDFLHGSEYVVTYEDKDGDWMLVGDVPWDMFTDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02032 348 MobiDBLite consensus disorder prediction 152 171 - -
Trre16g02032 348 FunFam Auxin-responsive protein 223 340 - -
Trre16g02032 348 MobiDBLite consensus disorder prediction 1 27 - -
Trre16g02032 348 ProSiteProfiles PB1 domain profile. 228 332 IPR000270 GO:0005515
Trre16g02032 348 SUPERFAMILY CAD & PB1 domains 226 329 - -
Trre16g02032 348 Gene3D - 225 342 - -
Trre16g02032 348 Pfam AUX/IAA family 72 339 IPR033389 -
Trre16g02032 348 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 335 IPR003311 GO:0005634|GO:0006355
Trre16g02032 348 MobiDBLite consensus disorder prediction 9 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02032 Trre-Chr16 16266089 16268911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02032 232 338 B3 DNA Binding Superfamily AT4G23980 30.841 3.52e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre16g02032 AUX_IAA 5.3e-88 CL0072