Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02029 ATGTCTCCTAGTTTCTATACCCTTCCCCTCTTCTTTTTGTTCTTCACATTCCCTTGTAATTCAATACACTTCCAATTTTCCCGTTTTATTGCAAGTGATCCCAACATAATCTACCAAGGTTCTGCAGCACCAATTGATGGAAAAGTTGATTTCAACATCAATAAAGAATATAACTGTCAAGTTGGAAGGGCAATCTATGCCAAAAGGGTTTTACTTTGGGATTTCACAACTCATTTCACCTTCATTATTGACACTCCAACAAATAAAGATGATATACCTGGTGATGGATTTGCCTTCTTCCTTGGTCCTTTTGGAATTGACATCCCACCCAATTCTTCAGGTTCTTTTTTGGGCTTATTTAACTTAACAACAATGAATTCTACTGATAATCATATTGTTCACGTGGAGTTTGATTCTTTCTCGAATTATGATCGAGGTGAGAGAGGACAACACGTAGAAATCAACGAAAACTCAATCTTTTCGTCAATTGTAACACCATGGAATGCCAAACTACACAGTAAAGACACTGCTGATGTATGGATTAGCTACAATTCTACGACCACAAATTTAACTGCATCATGGAAATATCAAAACACCTATAATCCTCAAGAAAAAACCAGTCTTTCATATCAAATTGATTTAATGAAGGTTTTACCTGAATGGGTTACTGTAGGATTTTCTGCTTCAACAGGTGCCATTGGAGAAAAGCACATCCTTCTATCTTGGGAATTCAGCTCAACTTCGGATCAAAGTTATGATGACAACGATGATACAAAAAAAATAAGATTAGTTGTGATAGTAACAGTCTCTTGTGGGATTGTAGCATTGGGAGCACTAACAATATTTGCATTACTTTGGATGAAAAGAAAGAGAAGTAGAAAGCAAAAGGAAGAGGCTATGCATTTAAGATCAATGAATCATGATCTTGAAGGAGGAGCAGGGCCGAGAAACTTTACCTACGAAGAACTTGATTTCGCTACACATAACTTCTCTAGTGATAGAAAGTTGGGTCAAGGTGGATTCGGAGCTGTTTATAAAGGTTACTTTTTTGATATAGATTTATCGGTTGCTGTGAAGAAAATATCGAGAGGATCAAGACAAGGTAAGAAAGAGTATGTGACTGAAGTTAAAGTCATTAGTCAACTAAGACATAAGAATCTTGTGAAGCTTTTAGGTTGGTGTCATGAAAAAGGTGATTTTCTACTTGTTTATGAGTTTATGCCAAATGGTAGTCTTGATTCTCATTTATTTGGTAAAAGAACACCTCTTTCTTGGAGTGTAAGGCACAAGATAGCACTTGGATTGGTCTCTTGTTTGCTTTATCTACATGAAGAATGGGAGAGATGTGTGGTTCATAGAGATATAAAATCAAGTAATATTATGCTTGATTCTAGTTTCAATGTTAAGCTTGGTGACTTTGGGTTGGCTAAGCTAATGGACCACGAGATTGGCCCCCAAACAACCGTCGTTGCCGGAACCTTAGGCTATATGGCTCCAGAATATATAAGCACAGGTAAGGCTAGGAAAGAGTCAGATGTATATAGTTTTGGGGTTGTTGCGTTGGAGATTACAACTGGAAGGAAAGTTGTTGAAGTTATGAGTGACAAAGATGGAGAGAAGGGAATGATTGAGTGGGTTTGGGATCATTATGGAAGAGGAGAGTTACTTAAGGCAATGGATGACAATTTGAAAAATGATTATGATGAGAAACAAGTAGAGTGTTTGATGATTGTTGGATTATGGTGTGCTCATCCTGATGTAAATCTTAGACCGTCGATTAGACAAGCAATTCAAGTGCTTAATTTTGAGGCTGGCCTTCCAAATCTTCCACCAAAGAAGCCTGTTGCAACCTATCACGCTCCTCCACCAGTTGTAAGCTCGGTTGGAGTTTCCATAACCACAAGCCTTCAAGATGGTCGTTAA 1923 0.3775 MSPSFYTLPLFFLFFTFPCNSIHFQFSRFIASDPNIIYQGSAAPIDGKVDFNINKEYNCQVGRAIYAKRVLLWDFTTHFTFIIDTPTNKDDIPGDGFAFFLGPFGIDIPPNSSGSFLGLFNLTTMNSTDNHIVHVEFDSFSNYDRGERGQHVEINENSIFSSIVTPWNAKLHSKDTADVWISYNSTTTNLTASWKYQNTYNPQEKTSLSYQIDLMKVLPEWVTVGFSASTGAIGEKHILLSWEFSSTSDQSYDDNDDTKKIRLVVIVTVSCGIVALGALTIFALLWMKRKRSRKQKEEAMHLRSMNHDLEGGAGPRNFTYEELDFATHNFSSDRKLGQGGFGAVYKGYFFDIDLSVAVKKISRGSRQGKKEYVTEVKVISQLRHKNLVKLLGWCHEKGDFLLVYEFMPNGSLDSHLFGKRTPLSWSVRHKIALGLVSCLLYLHEEWERCVVHRDIKSSNIMLDSSFNVKLGDFGLAKLMDHEIGPQTTVVAGTLGYMAPEYISTGKARKESDVYSFGVVALEITTGRKVVEVMSDKDGEKGMIEWVWDHYGRGELLKAMDDNLKNDYDEKQVECLMIVGLWCAHPDVNLRPSIRQAIQVLNFEAGLPNLPPKKPVATYHAPPPVVSSVGVSITTSLQDGR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02029 640 Pfam Protein kinase domain 331 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02029 640 CDD STKc_IRAK 336 601 - -
Trre16g02029 640 Gene3D Phosphorylase Kinase; domain 1 315 406 - -
Trre16g02029 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Trre16g02029 640 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 251 IPR013320 -
Trre16g02029 640 ProSitePatterns Protein kinases ATP-binding region signature. 336 360 IPR017441 GO:0005524
Trre16g02029 640 FunFam Lectin-domain containing receptor kinase A4.3 407 620 - -
Trre16g02029 640 CDD lectin_legume_LecRK_Arcelin_ConA 22 247 IPR001220 GO:0030246
Trre16g02029 640 Gene3D - 19 262 - -
Trre16g02029 640 ProSitePatterns Legume lectins alpha-chain signature. 218 227 IPR000985 -
Trre16g02029 640 SUPERFAMILY Protein kinase-like (PK-like) 314 619 IPR011009 -
Trre16g02029 640 Gene3D Transferase(Phosphotransferase) domain 1 407 621 - -
Trre16g02029 640 SMART serkin_6 330 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02029 640 FunFam L-type lectin-domain containing receptor kinase IX.1 315 406 - -
Trre16g02029 640 ProSiteProfiles Protein kinase domain profile. 330 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02029 640 PANTHER - 54 604 - -
Trre16g02029 640 Pfam Legume lectin domain 22 256 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02029 Trre-Chr16 16196884 16198806 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02029 11 619 Receptor kinase-like Gene Family AT5G10530 56.200 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre16g02029 Pkinase 8.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02029 - - cave:132172487 779.63