Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02028 ATGTCTCCTAGTTTCTATACCCTTCCCCTCTTCTTTTTGTTCTTCACATTCCCTTGTAATTCAATACACTTCCAATTTTCCCGTTTTATTGCAAGTGATCCCAACATAATCTACCAAGGTTCTGCAGCACCAATTGATGGAAAAGTTGATTTCAACATCAATAAAGAATATAACTGTCAAGTTGGAAGGGCAATCTATGCCAAAAGGGTTTTACTTTGGGATTTCACAACTCATTTCACCTTCATTATTGACACTCCAACAAATAAAGATGATATACCTGGTGATGGATTTGCCTTCTTCCTTGGTCCTTTTGGAATTGACATCCCACCCAATTCTTCAGGTTCTTTTTTGGGCTTATTTAACTTAACAACAATGAATTCTACTGATAATCATATTGTTCACGTGGAGTTTGATTCTTTCTCGAATTATGATCGAGGTGAGAGAGGACAACACGTAGAAATCAACGAAAACTCAATCTTTTCGTCAATTGTAACACCATGGAATGCCAAACTACACAGTAAAGACACTGCTGATGTATGGATTAGCTACAATTCTACGACCACAAATTTAACTGCATCATGGAAATATCAAAACACCTATAATCCTCAAGAAAAAACCAGTCTTTCATATCAAATTGATTTAATGAAGGTTTTACCTGAATGGGTTACTGTAGGATTTTCTGCTTCAACAGGTGCCATTGGAGAAAAGCACATCCTTCTATCTTGGGAATTCAGCTCAACTTCGGATCAAAGTTATGATGACAACGATGATACAAAAAAAATAAGATTAGTTGTGATAGTAACAGTCTCTTGTGGGATTGTAGCATTGGGAGCACTAACAATATTTGCATTACTTTGGATGAAAAGAAAGAGAAGTAGAAAGCAAAAGGAAGAGGCTATGCATTTAAGATCAATGAATCATGATCTTGAAGGAGGAGCAGGGCCGAGAAACTTTACCTACGAAGAACTTGATTTCGCTACACATAACTTCTCTAGTGATAGAAAGTTGGGTCAAGGTGGATTCGGAGCTGTTTATAAAGGTTACTTTTTTGATATAGATTTATCGGTTGCTGTGAAGAAAATATCGAGAGGATCAAGACAAGAATGGGAGAGATGTGTGGTTCATAGAGATATAAAATCAAGTAATATTATGCTTGATTCTAGTTTCAATGTTAAGCTTGGTGACTTTGGGTTGGCTAAGCTAATGGACCACGAGATTGGCCCCCAAACAACCGTCGTTGCCGGAACCTTAGGCTATATGGCTCCAGAATATATAAGCACAGGTAAGGCTAGGAAAGAGTCAGATGTATATAGTTTTGGGGTTGTTGCGTTGGAGATTACAACTGGAAGGAAAGTTGTTGAAGTTATGAGTGACAAAGATGGAGAGAAGGGAATGATTGAGTGGGTTTGGGATCATTATGGAAGAGGAGAGTTACTTAAGGCAATGGATGACAATTTGAAAAATGATTATGATGAGAAACAAGTAGAGTGTTTGATGATTGTTGGATTATGGTGTGCTCATCCTGATGTAAATCTTAGACCGTCGATTAGACAAGCAATTCAAGTGCTTAATTTTGAGGCTGGCCTTCCAAATCTTCCACCAAAGAAGCCTGTTGCAACCTATCACGCTCCTCCACCAGTTGTAAGCTCGGTTGGAGTTTCCATAACCACAAGCCTTCAAGATGGTCGTTAA 1692 0.3818 MSPSFYTLPLFFLFFTFPCNSIHFQFSRFIASDPNIIYQGSAAPIDGKVDFNINKEYNCQVGRAIYAKRVLLWDFTTHFTFIIDTPTNKDDIPGDGFAFFLGPFGIDIPPNSSGSFLGLFNLTTMNSTDNHIVHVEFDSFSNYDRGERGQHVEINENSIFSSIVTPWNAKLHSKDTADVWISYNSTTTNLTASWKYQNTYNPQEKTSLSYQIDLMKVLPEWVTVGFSASTGAIGEKHILLSWEFSSTSDQSYDDNDDTKKIRLVVIVTVSCGIVALGALTIFALLWMKRKRSRKQKEEAMHLRSMNHDLEGGAGPRNFTYEELDFATHNFSSDRKLGQGGFGAVYKGYFFDIDLSVAVKKISRGSRQEWERCVVHRDIKSSNIMLDSSFNVKLGDFGLAKLMDHEIGPQTTVVAGTLGYMAPEYISTGKARKESDVYSFGVVALEITTGRKVVEVMSDKDGEKGMIEWVWDHYGRGELLKAMDDNLKNDYDEKQVECLMIVGLWCAHPDVNLRPSIRQAIQVLNFEAGLPNLPPKKPVATYHAPPPVVSSVGVSITTSLQDGR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02028 563 Pfam Legume lectin domain 22 256 IPR001220 GO:0030246
Trre16g02028 563 Gene3D - 19 262 - -
Trre16g02028 563 ProSitePatterns Protein kinases ATP-binding region signature. 336 360 IPR017441 GO:0005524
Trre16g02028 563 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 251 IPR013320 -
Trre16g02028 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 373 385 IPR008271 GO:0004672|GO:0006468
Trre16g02028 563 FunFam Lectin-domain containing receptor kinase A4.3 364 543 - -
Trre16g02028 563 PANTHER - 367 527 - -
Trre16g02028 563 CDD lectin_legume_LecRK_Arcelin_ConA 22 247 IPR001220 GO:0030246
Trre16g02028 563 ProSitePatterns Legume lectins alpha-chain signature. 218 227 IPR000985 -
Trre16g02028 563 ProSiteProfiles Protein kinase domain profile. 137 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02028 563 Pfam Protein kinase domain 370 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02028 563 SMART serkin_6 330 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02028 563 Gene3D Transferase(Phosphotransferase) domain 1 357 544 - -
Trre16g02028 563 SUPERFAMILY Protein kinase-like (PK-like) 318 539 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02028 Trre-Chr16 16196884 16198806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02028 367 542 Receptor kinase-like Gene Family AT5G10530 69.663 4.39e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre16g02028 Lectin_legB 5.1e-58 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02028 - - csv:101218247 486.108