Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02027 ATGACTCCTAGTTTCTACACCCTTCCCCTACTCTTCTTGTCTTTCATTTTCTTCATATTCACTTCTAATTCAATTCACTTCCAAATTCCCCATTTTGATTCAAGTAATGCCAACATAATCTACCAAGGTTCTGCAGCAGCAACTGATGGAGGAGTTAACTTTAACATCTATAAAGATTATCAATGTCAAGTTGGAAGAGCCATATACTCCAAAAAAGTGTTACTTTGGGACTCAAATACAGGTCAACTCACTGACTTCACAACTAATTACACTTTTATCATAAACACTAGAAATAAATCTTTTTATGGCTATGGCTTAGCCTTTTTCTTGGCACCTTTTGGAATATTAGAAATCCCACCTAATTCTTCTAGTGGATTTTTTGGCCTATTTAACACCACAACAAAGGATTCATCATCTAGTAACCAAATTGTTCATGTGGAGTTTGATTCTTATCCAAATGATTTATGGGGTGAGACAACACAACATGTTGGAATAAACAATAATTCAATCATTTCATCGGTATCAACACCTTGGAATGCAAGTTACCATAGTGGAGACACTGCTCAGGTAAGTATTAGCTACAATTCTACAACCAAGAATTTGACTGTATCTTGGAAATATCAAACCACATCTAATTCTCAAGAAAAAACTAGTCTGTCATATCAAATTGATTTAATGAAAGTTTTACCTGAATGGATTACTGTTGGATTTTCTGCTTCAACAGGTGAATTTGCAGAATTAAATAATCTTTTGTCTTGGGAATTTAATTCCACTTTGGACAAAAGTAATGATGTTAATTCTAAAGAGACAAAATTAATTAGTATAGTAACAATCTCTTGTGGAGTTTTTGTATTAGGAGTGGTAGTATTTGTAGCATATGTTATACTTAAGAGTAAAAGAAAAAGAAGTAAAAAGCAAAAGGAAGAAGCCATGCATTTAACTTCAATGAATGATGACCTTGAAAGAGGAGCAGGTCCAAGAAGGTTTAACTATAAAGAACTTTATTTGGCAACCAATAAGTTCTCTAAAGATAAAAAGTTGGGTGAAGGTGGTTTTGGAGCAGTTTTCAAAGGTTACTTTTATGATTTAGATTTACAAGTTGCTGTGAAGAAAATATCAAGTGGGTCAAGACAAGGAAAGAAAGAGTATGTAACTGAAGTTAAACTCATTAGTCAGTTAAGACATCGAAATCTTGTGAAGTTGTTAGGTTGGTGTCATGAGAAAGGCGAGTTACTTCTTGTTTATGAGTTTATGCCAAATGGTAGTCTTGATTCTCATTTATTCGGGAAAAAAACGCCTCTTTCTTGGAGTGCAAGGCACAAAATAGTTATTGGATTAGCCTCTGGTTTGCTTTATCTACATGAAGAATGGGAGAGGTGCGTGGTACATAGAGATATTAAATCAAGTAATGTTATGTTAGATTCTAGTTTCAATGTCAAGCTTGGCGATTTCGGGTTGGCTAAATTAATGGATCACGAACTTGGGCCGCAAACAACTGGGCTAGCCGGAACATTCGGATATCTAGCTCCAGAATATGTGAGCACAGGAAGGGCCAGTAAAGAATCAGATGTGTATAGTTTTGGGATAGTTGTCATGGAGATAACTACGGGAAAGAAAACTACTGCAGTTTTGAAGGAAAAATATGAAGAGAAAGGAATGATTGAGTGGGTTTGGGATCATTATGGAAGAGGAGAGTTACTTAAGGCTATGGATGAGAATCTGAAAAAGGATTATGATGAAAAACAAGTAGAGTGTTTGATGATTGTTGGATTATGGTGTGCTCATCCTGATGTAAATCTTAGACCATCGATTCGACAAGCGATTCAAGTGCTTAATTTTGAAGTTTCTTTGCCAAATCTTCCACCCAACAGGCCTATTGCAATTTGCAACCTATGA 1896 0.3534 MTPSFYTLPLLFLSFIFFIFTSNSIHFQIPHFDSSNANIIYQGSAAATDGGVNFNIYKDYQCQVGRAIYSKKVLLWDSNTGQLTDFTTNYTFIINTRNKSFYGYGLAFFLAPFGILEIPPNSSSGFFGLFNTTTKDSSSSNQIVHVEFDSYPNDLWGETTQHVGINNNSIISSVSTPWNASYHSGDTAQVSISYNSTTKNLTVSWKYQTTSNSQEKTSLSYQIDLMKVLPEWITVGFSASTGEFAELNNLLSWEFNSTLDKSNDVNSKETKLISIVTISCGVFVLGVVVFVAYVILKSKRKRSKKQKEEAMHLTSMNDDLERGAGPRRFNYKELYLATNKFSKDKKLGEGGFGAVFKGYFYDLDLQVAVKKISSGSRQGKKEYVTEVKLISQLRHRNLVKLLGWCHEKGELLLVYEFMPNGSLDSHLFGKKTPLSWSARHKIVIGLASGLLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHELGPQTTGLAGTFGYLAPEYVSTGRASKESDVYSFGIVVMEITTGKKTTAVLKEKYEEKGMIEWVWDHYGRGELLKAMDENLKKDYDEKQVECLMIVGLWCAHPDVNLRPSIRQAIQVLNFEVSLPNLPPNRPIAICNL 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02027 631 ProSitePatterns Protein kinases ATP-binding region signature. 347 371 IPR017441 GO:0005524
Trre16g02027 631 Gene3D Transferase(Phosphotransferase) domain 1 418 629 - -
Trre16g02027 631 Pfam Legume lectin domain 25 268 IPR001220 GO:0030246
Trre16g02027 631 SMART serkin_6 341 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02027 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Trre16g02027 631 Gene3D Phosphorylase Kinase; domain 1 326 417 - -
Trre16g02027 631 PANTHER - 48 612 - -
Trre16g02027 631 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 268 IPR013320 -
Trre16g02027 631 CDD STKc_IRAK 347 612 - -
Trre16g02027 631 FunFam Lectin-domain containing receptor kinase A4.3 418 630 - -
Trre16g02027 631 FunFam L-type lectin-domain containing receptor kinase IX.1 326 417 - -
Trre16g02027 631 SUPERFAMILY Protein kinase-like (PK-like) 321 623 IPR011009 -
Trre16g02027 631 CDD lectin_legume_LecRK_Arcelin_ConA 25 259 IPR001220 GO:0030246
Trre16g02027 631 ProSiteProfiles Protein kinase domain profile. 341 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02027 631 Gene3D - 22 273 - -
Trre16g02027 631 Pfam Protein kinase domain 341 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02027 Trre-Chr16 16193596 16195491 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02027 10 627 Receptor kinase-like Gene Family AT5G10530 57.600 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre16g02027 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02027 - - csin:114301860 785.408