Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02025 ATGGCTCCCATTTTCTATACCACCTTCTTCTTGTCCTTAATTTTCTTCACTGTCCCTTGTTATTCAATTCAATTCCAAATTCCACGTTTTAATCCAAGTGATACCAACATAATCTACCAAGGCTCTGCAGCAGTAGTTGATGGAGAAGTTAACTTTAACATCAATGAACTTTATTCATGTCAAGTAGGAAGGGCCATCTATTCTAAACAAGTATTACTTTGGGATACAAACACAGGTCAATTAACTGATTTCACAACTCATTACACTTTTATCATAAACACTCAAAATAAATCTTTATATGGTCATGGCCTTGCATTTTTCTTGGCTCCTTTTGGATTTGACATCCCACCCAATTCTTCTGGTGGCTTGATGGGGCTATTTAACACCACAACAAAGGATTCATCATCTAGTAATCAAATTGTTCATGTGGAGTTTGATTCTTACCCAAATGATGAATGGAGTGAGACAAACCAACATGTTGGAATCAACAATAATTCAATCATTTCATCGGTATCAACACCTTGGAATGCAAGTTACCATAGCGGAGACATTGTCGAGGTAAGTATTAGCTATAATTCTACAACCAAGAATTTGACTGTATCTTGGAAATATCAAACCACAGATAATCCACAAGAGAATACTAGTCTTTCATATCAAATTGATTTGATAAAAATTCTACCTGAATGGATTACTGTTGGATTTTCTGCTGCAACTGGTACATTTGGAGAATTAAATAATCTTTTGTCATGGGAATTTAATTCCACATTGGACAAAAGTGATGATAGTAATTCAAAAGAGACAAGATTGATTCTGATAGTAACAGTTACTTGTGGAGTTGTGATATTAGCAGTGGTAGCATTTGTAGCATATGTAATACTAAAGAAGAAAAGAAAGAGAAGTGAAAAGCAAAGGGAAGAGGCTATGCATTTAACTTCAATGAATGATGACCTTGAAAGAGGAGCAGGGCCAAGAAGATTTACCTACAAAGAACTTGATTTGGCTACCAATAACTTCTCTAAGGATAGAAAATTGGGTCAAGGTGGATTTGGAGCTGTTTTTAAAGGTTACTTTGTTGATTTAGATTTACAAGTTGCTGTGAAGAAAATATCAAGAGGATCAAGACAAGGTAAGAAAGAGTATGTAACTGAAGTTAAAGTCATTAGTCAACTAAGACATAGGAATCTTGTGAAGCTCTTAGGTTGGTGCCATGAAAAAGGTGATTTTCTACTTGTTTATGAGTTTATGCCAAATGGTAGTCTTGATTCTCATTTATTTGGTAAAAGATTACCTCTTTCTTGGAGTGTAAGGCACAAAATAGTTCTTGGATTGGCCTCTGGTTTGCTTTATCTACATGAAGAATGGGAGAGGTGTGTGGTACATAGAGATATTAAATCAAGTAATGTTATGTTAGATTCTAGTTTCAATGTCAAGCTTGGCGATTTCGGGTTGGCTAAATTAATGGATCACGAACTCGGGCCGCAAACAACTGGGCTAGCCGGAACATTCGGCTATCTAGCTCCAGAATATGTCAGTACAGGTCGGGCTAGTAAAGAGTCGGATGTGTATAGTTTTGGGATAGTTGTCATGGAGATAACAACCGGAAAGAAAGCGACTGAAGTTATAAAAGAAAAAGATGAAGAGAAGGGAATGATTGAGTGGGTTTGGGATCATTATGGAAGAAGAGAGTTACTTATGGCTATGGATGAGACTTTGAAAAGGGATTATGATGAGAAACAAGTAGAGTGTTTGATGATTGTTGGATTATGGTGTGCTCATCCTGATGTAAATCTTAGACCATCGATTCGACAAGCGATTCAAGTGCTTAATTTTGAGGTTTCATTGCCAAATCTTCCACCAAAGAGGCCTGTTGCAACTTATCATGCTCCTCCTGCACCTTCTGTAAGTTCAGTTGAAGCTTCCATAACCAATAGTCTTCAGGATGGTCGTTAA 1950 0.3672 MAPIFYTTFFLSLIFFTVPCYSIQFQIPRFNPSDTNIIYQGSAAVVDGEVNFNINELYSCQVGRAIYSKQVLLWDTNTGQLTDFTTHYTFIINTQNKSLYGHGLAFFLAPFGFDIPPNSSGGLMGLFNTTTKDSSSSNQIVHVEFDSYPNDEWSETNQHVGINNNSIISSVSTPWNASYHSGDIVEVSISYNSTTKNLTVSWKYQTTDNPQENTSLSYQIDLIKILPEWITVGFSAATGTFGELNNLLSWEFNSTLDKSDDSNSKETRLILIVTVTCGVVILAVVAFVAYVILKKKRKRSEKQREEAMHLTSMNDDLERGAGPRRFTYKELDLATNNFSKDRKLGQGGFGAVFKGYFVDLDLQVAVKKISRGSRQGKKEYVTEVKVISQLRHRNLVKLLGWCHEKGDFLLVYEFMPNGSLDSHLFGKRLPLSWSVRHKIVLGLASGLLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHELGPQTTGLAGTFGYLAPEYVSTGRASKESDVYSFGIVVMEITTGKKATEVIKEKDEEKGMIEWVWDHYGRRELLMAMDETLKRDYDEKQVECLMIVGLWCAHPDVNLRPSIRQAIQVLNFEVSLPNLPPKRPVATYHAPPAPSVSSVEASITNSLQDGR 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02025 649 ProSitePatterns Protein kinases ATP-binding region signature. 344 368 IPR017441 GO:0005524
Trre16g02025 649 MobiDBLite consensus disorder prediction 623 649 - -
Trre16g02025 649 SUPERFAMILY Protein kinase-like (PK-like) 322 627 IPR011009 -
Trre16g02025 649 PANTHER - 51 610 - -
Trre16g02025 649 MobiDBLite consensus disorder prediction 635 649 - -
Trre16g02025 649 FunFam L-type lectin-domain containing receptor kinase IX.1 323 414 - -
Trre16g02025 649 Pfam Legume lectin domain 23 265 IPR001220 GO:0030246
Trre16g02025 649 SMART serkin_6 338 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02025 649 Gene3D Transferase(Phosphotransferase) domain 1 415 629 - -
Trre16g02025 649 FunFam Lectin-domain containing receptor kinase A4.3 415 628 - -
Trre16g02025 649 CDD STKc_IRAK 344 609 - -
Trre16g02025 649 Gene3D - 21 271 - -
Trre16g02025 649 FunFam L-type lectin-domain containing receptor kinase IX.1 21 265 - -
Trre16g02025 649 Pfam Protein kinase domain 338 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02025 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Trre16g02025 649 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 270 IPR013320 -
Trre16g02025 649 ProSiteProfiles Protein kinase domain profile. 338 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02025 649 CDD lectin_legume_LecRK_Arcelin_ConA 23 256 IPR001220 GO:0030246
Trre16g02025 649 Gene3D Phosphorylase Kinase; domain 1 323 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02025 Trre-Chr16 16189748 16191697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02025 4 627 Receptor kinase-like Gene Family AT5G10530 58.070 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre16g02025 Pkinase 2.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02025 - - jre:109014893 832.402