LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g02022	ATGGCTCCCATTTTCTATACCACCTTCATCTTCTCCTTGATTTTCATAATCACTTTCTCTGTTAATTCAATTTACTTCAAATTTTCCCGTTTCGATCCTAATGATGTCGACTTAGTCTACCAAGGTTCTGCAGCACCACTTGATAGACTAGTTAATTTTAACATCAATGACTTATATACATGCCAAGCTGGAAGAGTCTTGTATTCAGAAAAAGTGTTAATTTGGGACTCAAAAACAGGTAAACTCACTGATTTCACAACTCATTACACTTTTATAATCAACACTCAAAATTATACTGCATATGGTCACGGACTTGCTTTTTTCTTGGCTCCTTTTGGATTTGAAATACCACCCAATTCTGATGGTGGCTTTTTGGGACTATTTAACACCACAACAATGGATTCACCTAGTAACAAAATGGTTCATGTGGAGTTTGATTCTTATGCAAATGGTGAATGGGGTGAGACAAGTGAGCATGTGGGAATCAACAATAATTCAGTAATATCATCGGCATCGATAACTTGGAATGCAAGTAAACATAGTGGAGACCCTGCTGAGGTATGGATTAGTTATAATTCTACAACTAAGAATTTGACTGTATATTGGAAATACCAAGCCACCATTGATCCTCAAGAAAAAACTAGCCTTTCTTATCGAATTGATTTAACGAAGGTTTTGCCTGAATGGGTTACTGTAGGATTTTCTACTGCAACAGGTGCCATTGGAGAAATAAATTATCTTTTGTCATGGGAATTCAACTCCACTTTGGAAAAAAGTGGTGACAGTAAGATAAAAGCGACAAAACTAGCTGCGATTCTAATCGTCTCTGGTGTGGTTGTAGTAGTTGGAGTGGTAGCATTAGCAGCATATGTATTAGTTTGGAGGAAAAGAAACAGAAGTAAAAAGTGTAAGGAAGAGGCTATGCATTTAACTTCAATGAATGATGATCTTGAAAGAGGTGCAGGTCCAAGGAGGTTTACCTACAAAGAACTTGATTTGGCTACCAATAACTTCTCTAAGGATAGAAAGTTAGGTCAAGGTGGATTTGGAGCTGTTTTTAAAGGTTACTTTGTTGATTTAGATTTACATGTTGCTGTGAAGAAAATATCAAGAGGATCAAGACAAGGTAAGAAAGAGTATGTAACTGAAGTTAAAGTCATTAGTCAACTAAGACATAGGAATCTTGTGAAGCTATTAGGTTGGTGTCATGATAAAGGTGAGTTTCTTCTTGTTTATGAGTTTATGCCAAATGGTAGTCTTGATTCTCATTTATTTGGTAAAAGAATACCTCTTTCTTGGAGTGCAAGGCACAAAATAGTTCTTGGATTAGCCTCTGGTTTGCTTTATCTACATGAAGAATGGGAGAGGTGTGTGGTACATAGAGATATTAAATCAAGTAATGTTATGTTAGATTCTAGTTTCAATGTCAAGCTTGGCGATTTCGGGTTGGCTAAATTAATGGATCACGAACTTGGGCCGCAAACAACTGGGCTAGCCGGAACATTGGGCTATCTAGCTCCAGAATACGTGAGTACAGGTCGGGCTAGTAAAGAGTCGGATGTGTATAGTTTTGGGATAGTTGTCTTAGAGATAACTACCGGAAAGAAAGCGACTGAAGTTATGAAGGAAAAAGATGGAGAGAAAGGAATGATTGAGTGGGTTTGGGATCATTATGGAAGAGGAGAAATCCTTGTAGCAATGGATGAGAATTTGAAAAAGGATTTTGATGAGAAACAAGTTGAGTGCTTGATGATTGTGGGACTTTGGTGTGCTCATCCTGATGTAAATCTTATGCCATCAATTAGACAAGCTATTCAAGTGCTTAATTTTGAAGTTTTCATGCCAAATCTTTCACCAAAGAGACCTGTTGCTACTTATCATGCTCCTACTACACCAACAATAATAAGCTCTGTAGAAGCTTCTATTACCACAAGTCTTCAAGATGGTCGTTAA	1953	0.3728	MAPIFYTTFIFSLIFIITFSVNSIYFKFSRFDPNDVDLVYQGSAAPLDRLVNFNINDLYTCQAGRVLYSEKVLIWDSKTGKLTDFTTHYTFIINTQNYTAYGHGLAFFLAPFGFEIPPNSDGGFLGLFNTTTMDSPSNKMVHVEFDSYANGEWGETSEHVGINNNSVISSASITWNASKHSGDPAEVWISYNSTTKNLTVYWKYQATIDPQEKTSLSYRIDLTKVLPEWVTVGFSTATGAIGEINYLLSWEFNSTLEKSGDSKIKATKLAAILIVSGVVVVVGVVALAAYVLVWRKRNRSKKCKEEAMHLTSMNDDLERGAGPRRFTYKELDLATNNFSKDRKLGQGGFGAVFKGYFVDLDLHVAVKKISRGSRQGKKEYVTEVKVISQLRHRNLVKLLGWCHDKGEFLLVYEFMPNGSLDSHLFGKRIPLSWSARHKIVLGLASGLLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHELGPQTTGLAGTLGYLAPEYVSTGRASKESDVYSFGIVVLEITTGKKATEVMKEKDGEKGMIEWVWDHYGRGEILVAMDENLKKDFDEKQVECLMIVGLWCAHPDVNLMPSIRQAIQVLNFEVFMPNLSPKRPVATYHAPTTPTIISSVEASITTSLQDGR	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g02022	650	SMART	serkin_6	338	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g02022	650	ProSitePatterns	Protein kinases ATP-binding region signature.	344	368	IPR017441	GO:0005524
	Trre16g02022	650	Gene3D	-	21	269	-	-
	Trre16g02022	650	ProSiteProfiles	Protein kinase domain profile.	338	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g02022	650	FunFam	L-type lectin-domain containing receptor kinase IX.1	22	265	-	-
	Trre16g02022	650	Pfam	Legume lectin domain	25	264	IPR001220	GO:0030246
	Trre16g02022	650	Gene3D	Phosphorylase Kinase; domain 1	323	414	-	-
	Trre16g02022	650	SUPERFAMILY	Concanavalin A-like lectins/glucanases	23	268	IPR013320	-
	Trre16g02022	650	Pfam	Protein kinase domain	338	547	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g02022	650	Gene3D	Transferase(Phosphotransferase) domain 1	415	629	-	-
	Trre16g02022	650	SUPERFAMILY	Protein kinase-like (PK-like)	322	633	IPR011009	-
	Trre16g02022	650	CDD	STKc_IRAK	344	609	-	-
	Trre16g02022	650	PANTHER	-	54	610	-	-
	Trre16g02022	650	FunFam	L-type lectin-domain containing receptor kinase IX.1	323	414	-	-
	Trre16g02022	650	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	458	470	IPR008271	GO:0004672\|GO:0006468
	Trre16g02022	650	FunFam	Lectin-domain containing receptor kinase A4.3	415	628	-	-
	Trre16g02022	650	ProSitePatterns	Legume lectins alpha-chain signature.	226	235	IPR000985	-
	Trre16g02022	650	CDD	lectin_legume_LecRK_Arcelin_ConA	24	256	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g02022	Trre-Chr16	16168579	16170531	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g02022	7	627	Receptor kinase-like Gene Family	AT5G10530	57.302	0.0	727

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Trre16g02022		Pkinase	6.6e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g02022	-		-	qsu:112006239	816.609