LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g02020	ATGGCTATCTTCACATATTCTTCACACTATAATCAAACCAAAAACACCTTTTCCATGTTAATCATAATTTTTACTTTGTTCTATGCACTTTTTAACCCTGCATACTCAATTTCCTTCAACTTCTCTACCTTCCCATCAAACTTATATCACATAAATTTCCAAGGTGATGCATTTTCATCAAACAATGTTCTTCAGCTTACAAAAAACCAACTCGACGGCCCAATAACGAGCAGCGTTGGTCGTGCTTCATTCGACCAACCGGTGAAGCTTTACGACAAAAAAACAAAAGAACTAACTGATTTCACAACACATTTCTCCTTTAAAATGAAATCCGTTAATTCTTCGCAGTCCGGTGATGGTTTATCGTTTTTCATCGCTCCTTTTCAATCTGATATCCCGATAAACTCCTCCGGTGGTTACCTCGGTTTATTCAGCGAGGACTCTGCATTGAACACTAGCAAAAACCAAATAGTAGCTGTTGAGTTTGATAGTTTTTCGAATGATTGGGATCCACAACTTGATCATGTTGGAATCAATGTTAATTCGATTCGATCGGTTCAAAATGTTTCTTGGACGAGTAACATCATGAAAAACGGTTCGATTGCGAATGCTTGGATTTCGTATAACTCAACAACAAAAAACCTTACTGTTTTTCTTACATATTCTAAAAATCCAACTTTTCAAGGAAACTCGAGTCTTTCGCATGTTATTGATTTGAGTGAAATTTTGCCTGAATATGTTAGGATTGGTTTTTCAGCTGCAACTGGTCAATGGATTGAAATACACAACATTCTATCTTGGTCATTCAATTCATCTTTGGAAAATGGTAATAGCAAAAAAACTAACAAGGTTGTTTTAGGTGTTGGTTTAAGTGTTGGTTTTGGTTTTTTAACATGTTTTGTAGGTTTTTTATGGTTCATTTTTTGGAGAAAAAGAAAAGGGTTATTATATAGGGGTAAAATGGACAATAATAGAGATATTGATGGTTCAATAGATGAAGCTGAATTTGAGAGAGGAACTGGTCCAAAAAAATTCACTTACAAAGTACTAAGCAATGCAACAAATGGTTTTGATGAAAAAGGTAAACTTGGAGAAGGTGGATTTGGAGGTGTTTATAAGGGTATAATTGGAAAAACAAATAAAAAAATGGAAGTAGCTGTGAAAAGGGTTTCAAAAGGTTCAAGACAAGGTAAAAAAGAATATATATCAGAAGTAAGAATAATAAGTAAATTAAGACATAGAAATTTGGTTCAATTATTAGGTTGGTGTCATGAAAAAAATGAGTTATTACTTGTTTATGAATATATGCCTAATGGAAGTCTTGATTTTCATTTATTTGGAAAAGGGATTATGTTAAGTTGGAATTTAAGGTACAAAATTGCATTAGGCTTAGCATCATCACTTCTTTATTTACATGAAGAGTGGGAACAATGTGTGGTACATAGAGATATTAAATCAAGTAATGTTATGTTAGATGGAAATTTTAATTCAAAATTAGGTGATTTTGGTCTTGCAAGATTAGTGGATCATGAACTTGGTTCACAAACAACTGTTTTAGCTGGTACAATGGGATATTTAGCACCTGAATGTGTTACAACTGGAAAATCAAGTAAAGAATCTGATGTATATAGTTTTGGTGTTGTTGCACTTGAAATTGTATGTGGTAGAAGATCAATTGAACCAAAAGAAGAAGCTAAGAAAGTTAGGCTTGTGGAATGGGTTTGGGAGTTATATGGTAAAAGTGAATTATTTGAAGGTGTTGATAAAGGGTTAAATTTGGAATATGATAAAAAGCAAATGGAATATTTAATGATTATTGGATTATGGTGTTGTCATCCTGATTTTACTATGAGGCCTTCTATTAGACAAGTGATTAATGTTTTGAATTTTGAAGCTAATTTGCCTAATCTTCCTTCAAAATTGCCTGTGCCTATGTATTTTGCACCTCCTATGGAGATGTGTAGATTTTCTTATACTTTTGATGGTATTACAAATACTACTAAAGGTTCATCTACTTATTCATCATTATCAGCTGGGTCTAGAAAATCTCTATTGTAG	2058	0.3294	MAIFTYSSHYNQTKNTFSMLIIIFTLFYALFNPAYSISFNFSTFPSNLYHINFQGDAFSSNNVLQLTKNQLDGPITSSVGRASFDQPVKLYDKKTKELTDFTTHFSFKMKSVNSSQSGDGLSFFIAPFQSDIPINSSGGYLGLFSEDSALNTSKNQIVAVEFDSFSNDWDPQLDHVGINVNSIRSVQNVSWTSNIMKNGSIANAWISYNSTTKNLTVFLTYSKNPTFQGNSSLSHVIDLSEILPEYVRIGFSAATGQWIEIHNILSWSFNSSLENGNSKKTNKVVLGVGLSVGFGFLTCFVGFLWFIFWRKRKGLLYRGKMDNNRDIDGSIDEAEFERGTGPKKFTYKVLSNATNGFDEKGKLGEGGFGGVYKGIIGKTNKKMEVAVKRVSKGSRQGKKEYISEVRIISKLRHRNLVQLLGWCHEKNELLLVYEYMPNGSLDFHLFGKGIMLSWNLRYKIALGLASSLLYLHEEWEQCVVHRDIKSSNVMLDGNFNSKLGDFGLARLVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEIVCGRRSIEPKEEAKKVRLVEWVWELYGKSELFEGVDKGLNLEYDKKQMEYLMIIGLWCCHPDFTMRPSIRQVINVLNFEANLPNLPSKLPVPMYFAPPMEMCRFSYTFDGITNTTKGSSTYSSLSAGSRKSLL	685

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g02020	685	SUPERFAMILY	Protein kinase-like (PK-like)	341	652	IPR011009	-
	Trre16g02020	685	FunFam	Lectin-domain containing receptor kinase A4.3	436	648	-	-
	Trre16g02020	685	FunFam	L-type lectin-domain containing receptor kinase IX.1	342	435	-	-
	Trre16g02020	685	Gene3D	Phosphorylase Kinase; domain 1	342	435	-	-
	Trre16g02020	685	ProSitePatterns	Legume lectins beta-chain signature.	158	164	IPR019825	-
	Trre16g02020	685	ProSiteProfiles	Protein kinase domain profile.	357	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g02020	685	CDD	lectin_legume_LecRK_Arcelin_ConA	37	273	IPR001220	GO:0030246
	Trre16g02020	685	ProSitePatterns	Legume lectins alpha-chain signature.	243	252	IPR000985	-
	Trre16g02020	685	SUPERFAMILY	Concanavalin A-like lectins/glucanases	34	275	IPR013320	-
	Trre16g02020	685	FunFam	L-type lectin-domain containing receptor kinase IX.1	35	282	-	-
	Trre16g02020	685	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	479	491	IPR008271	GO:0004672\|GO:0006468
	Trre16g02020	685	ProSitePatterns	Protein kinases ATP-binding region signature.	363	388	IPR017441	GO:0005524
	Trre16g02020	685	Pfam	Legume lectin domain	37	283	IPR001220	GO:0030246
	Trre16g02020	685	Gene3D	Transferase(Phosphotransferase) domain 1	436	649	-	-
	Trre16g02020	685	Pfam	Protein kinase domain	358	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g02020	685	PANTHER	-	54	638	-	-
	Trre16g02020	685	Gene3D	-	35	288	-	-
	Trre16g02020	685	SMART	serkin_6	357	628	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g02020	Trre-Chr16	16156774	16158831	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g02020	18	646	Receptor kinase-like Gene Family	AT5G10530	50.464	0.0	587

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Trre16g02020		Pkinase	1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g02020	-		-	gmx:100777201	970.304