Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02019 ATGTTGTTTTGGTGGTTTGGAATGATTGTGCAACTTTGTTTCTTGCTATGTGGTTGTTCTGAGAAAACATCATTAAGAGGAAGTTCAAAGATTATTAATGGCATTGGATTATCATCTAAAGTCAAGCTGAATACAGAAGAAGACCAACAGCAGTTGGTTGTTGACAATGGCATTGTTTCTGTGACATTATCAAGACCTGAAGGGTACATCCTTGGAATATCGTATAATGGAATTGACAACATTCTTGAATCTAAAAACGAACAAGTAGATAGAGGGTACTTCGACGTTACTTGGAATGAACCGGGAAAGGAAGGTGAAACCCAGAGAATCCATGGGACAAATTTTTCAGTCATAGCAGCTGATGAGAATATGGTGGAGCTTTCATTTTCAAAATCATGGACATCTTCCATGATGGGTACAGATGTCCCTATAAACATAGACAAAAGATATATTTTCAGAAGTGGTGATTCTGGATTTTATTCATACGTAATATTTGATCGCCCTGAAGGAATGCCAGCAATTGAGGTTGATCAAATTAGATATGTTTACAAACTCGATGAAGACAGATTCAAGTACATGGCATTATCTGATACAAGACAAAGAAGCATGCCATCAATGAATGATAGAATAACAGGTCAAATTCTAGCTTACAAAGAAGCAGTACTATTAACTAAACCAAGTAACCCACAATTTAGAGGAGAGGTGGATGATAAATATCAATACTCATGTGAAAACACAGATAACACTGTTCATGGATGGATTAGTTTTGATTCTGATGCACCCATTGGATTTTGGATGATAACACCAAGTAATGAGTTTCGTAATGGTGGACCCACTAAGCAAGATCTTACTTCTCATGTTGGGCCCTACACACTCTCGATGTTTGTGAGCACCCATTATGCTGGCAAGGAAGTAACCATGGCATTTCAAGATGGAGAGACATATAAAAAAGCTTTTGGTCCTGTATTTGTCTACCTTAACACTGATTCAAAAGATAATGATAAACTATCTCTCTGGACAGATGCTGTACAACAGTCATCCAAGGAAGTCCAAAGTTGGCCTTATGATTTTATTCAATCACAAGATTATTTTCCACCTAATCAAAGGGGAGCAGTATTTGGAAGATTATTAGTCCAAGATAGGTACCTCAAAGGAGGAAGATTTCAATGTACTAATGCTTATTTGGGTCTAGCTTTGCCTGGAGATGCAGGATCATGGCAGAGAGAAAGCAAGGGCTATCAATTCTGGACTCGAGCTGATGCCAAAGGATACTTTAAAATAAATAATGTTGTGCCAGGTGATTATAATTTGTATGGTTGGGTCCCTGGATTTATTGGTGATTACAAATATAATGGTACCATCACCATCACCCCAGGAGGAATCATAAACTTAAATTCACTTGTATATAATCCTCCAAGAAATGGACCAACCATTTGGGAAATTGGGATACCAGATCGTTCAGCTTCGGAATTTCATGTACCTGATCCGTACCCTAGTCTTATGAACAAATTATACGTCGAACAACGCAAAGACAAGTTTAGACAGTACGGATTGTGGGAACGTTACACTGATATGTATCCAAATGATGATCTTGTTTACACCGTGGGTGTTAACAAGTATCGGGATTGGTTTTATGCTCAAGTTACAAGAAGCACAGAAAATAAGACATATGAGCCAACAACATGGCAGATTATATTTGATCATCAACATGACATAATGAATGGAAACTACACTTTACAACTAGCCTTGGCTAGTGCTGCTGATGCTGACCTACAGGTTCGGTTCAATGACCCTAGCATATATCCACCGCACTTTGCGACAGGGCGCATAGGAGGAGACAATGCCATAGCAAGGCATGGAATTCATGGATTGTATTGGTTGTTCACCATTGATGTACCAAGTAATCTGCTTGTGAAAGGACAGAACATCATCTATCTGAGACAATCAAAAGCCATTAACCAATTTCAAGGAGTTATGTATGATTATATTCGTTTAGAACGACCGCCAACAACTTGA 2016 0.3834 MLFWWFGMIVQLCFLLCGCSEKTSLRGSSKIINGIGLSSKVKLNTEEDQQQLVVDNGIVSVTLSRPEGYILGISYNGIDNILESKNEQVDRGYFDVTWNEPGKEGETQRIHGTNFSVIAADENMVELSFSKSWTSSMMGTDVPINIDKRYIFRSGDSGFYSYVIFDRPEGMPAIEVDQIRYVYKLDEDRFKYMALSDTRQRSMPSMNDRITGQILAYKEAVLLTKPSNPQFRGEVDDKYQYSCENTDNTVHGWISFDSDAPIGFWMITPSNEFRNGGPTKQDLTSHVGPYTLSMFVSTHYAGKEVTMAFQDGETYKKAFGPVFVYLNTDSKDNDKLSLWTDAVQQSSKEVQSWPYDFIQSQDYFPPNQRGAVFGRLLVQDRYLKGGRFQCTNAYLGLALPGDAGSWQRESKGYQFWTRADAKGYFKINNVVPGDYNLYGWVPGFIGDYKYNGTITITPGGIINLNSLVYNPPRNGPTIWEIGIPDRSASEFHVPDPYPSLMNKLYVEQRKDKFRQYGLWERYTDMYPNDDLVYTVGVNKYRDWFYAQVTRSTENKTYEPTTWQIIFDHQHDIMNGNYTLQLALASAADADLQVRFNDPSIYPPHFATGRIGGDNAIARHGIHGLYWLFTIDVPSNLLVKGQNIIYLRQSKAINQFQGVMYDYIRLERPPTT 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02019 671 SUPERFAMILY Galactose mutarotase-like 43 334 IPR011013 GO:0003824|GO:0005975|GO:0030246
Trre16g02019 671 Pfam Polysaccharide lyase family 4, domain II 392 462 IPR029413 -
Trre16g02019 671 Pfam Rhamnogalacturonate lyase family 44 235 IPR010325 -
Trre16g02019 671 Gene3D - 366 466 - -
Trre16g02019 671 FunFam Rhamnogalacturonate lyase B 365 464 - -
Trre16g02019 671 CDD RGL4_M 368 467 IPR029413 -
Trre16g02019 671 Gene3D - 43 342 IPR014718 GO:0030246
Trre16g02019 671 Gene3D - 474 666 - -
Trre16g02019 671 SUPERFAMILY Galactose-binding domain-like 474 666 IPR008979 -
Trre16g02019 671 CDD RGL4_N 51 334 - -
Trre16g02019 671 Pfam Polysaccharide lyase family 4, domain III 477 665 IPR029411 -
Trre16g02019 671 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 45 669 - -
Trre16g02019 671 CDD RGL4_C 479 666 - -
Trre16g02019 671 SUPERFAMILY Starch-binding domain-like 364 466 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02019 Trre-Chr16 16140366 16149486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02019 39 668 Polysaccharide Lyase AT1G09890 54.890 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02019 K18195 - gmx:100776664 1039.25