Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02018 ATGAAGATGAATGTGTTTAGTAAGAAGAACAAAAATGTTATGTTGTTTTGGTGGTTTGGAATGATTGTGCAACTTTGTTTCTTGCTATGTGGTTGTTCTGAGAAAACATCATTAAGAGGAAGTTCAAAGATTATTAATGGCATTGGATTATCATCTAAAGTCAAGCTGAATACAGAAGAAGACCAACAGCAGTTGGTTGTTGACAATGGCATTGTTTCTGTGACATTATCAAGACCTGAAGGGTACATCCTTGGAATATCGTATAATGGAATTGACAACATTCTTGAATCTAAAAACGAACAAGTAGATAGAGGGTACTTCGACGTTACTTGGAATGAACCGGGAAAGGAAGGTGAAACCCAGAGAATCCATGGGACAAATTTTTCAGTCATAGCAGCTGATGAGAATATGGTGGAGCTTTCATTTTCAAAATCATGGACATCTTCCATGATGGGTACAGATGTCCCTATAAACATAGACAAAAGATATATTTTCAGAAGTGGTGATTCTGGATTTTATTCATACGTAATATTTGATCGCCCTGAAGGAATGCCAGCAATTGAGGTTGATCAAATTAGATATGTTTACAAACTCGATGAAGACAGATTCAAGTACATGGCATTATCTGATACAAGACAAAGAAGCATGCCATCAATGAATGATAGAATAACAGGTCAAATTCTAGCTTACAAAGAAGCAGTACTATTAACTAAACCAAGTAACCCACAATTTAGAGGAGAGGTGGATGATAAATATCAATACTCATGTGAAAACACAGATAACACTGTTCATGGATGGATTAGTTTTGATTCTGATGCACCCATTGGATTTTGGATGATAACACCAAGTAATGAGTTTCGTAATGGTGGACCCACTAAGCAAGATCTTACTTCTCATGTTGGGCCCTACACACTCTCGATGTTTGTGAGCACCCATTATGCTGGCAAGGAAGTAACCATGGCATTTCAAGATGGAGAGACATATAAAAAAGCTTTTGGTCCTGTATTTGTCTACCTTAACACTGATTCAAAAGATAATGATAAACTATCTCTCTGGACAGATGCTGTACAACAGTCATCCAAGGAAGTCCAAAGTTGGCCTTATGATTTTATTCAATCACAAGATTATTTTCCACCTAATCAAAGGGGAGCAGTATTTGGAAGATTATTAGTCCAAGATAGGTACCTCAAAGGAGGAAGATTTCAATGTACTAATGCTTATTTGGGTCTAGCTTTGCCTGGAGATGCAGGATCATGGCAGAGAGAAAGCAAGGGCTATCAATTCTGGACTCGAGCTGATGCCAAAGGATACTTTAAAATAAATAATGTTGTGCCAGGTGATTATAATTTGTATGGTTGGGTCCCTGGATTTATTGGTGATTACAAATATAATGGTACCATCACCATCACCCCAGGAGGAATCATAAACTTAAATTCACTTGTATATAATCCTCCAAGAAATGGACCAACCATTTGGGAAATTGGGATACCAGATCGTTCAGCTTCGGAATTTCATGTACCTGATCCGTACCCTAGTCTTATGAACAAATTATACGTCGAACAACGCAAAGACAAGTTTAGACAGTACGGATTGTGGGAACGTTACACTGATATGTATCCAAATGATGATCTTGTTTACACCGTGGGTGTTAACAAGTATCGGGATTGGTTTTATGCTCAAGTTACAAGAAGCACAGAAAATAAGACATATGAGCCAACAACATGGCAGATTATATTTGATCATCAACATGACATAATGAATGGAAACTACACTTTACAACTAGCCTTGGCTAGTGCTGCTGATGCTGACCTACAGGTTCGGTTCAATGACCCTAGCATATATCCACCGCACTTTGCGACAGGGCGCATAGGAGGAGACAATGCCATAGCAAGGCATGGAATTCATGGATTGTATTGGTTGTTCACCATTGATGTACCAAGTAATCTGCTTGTGAAAGGACAGAACATCATCTATCTGAGACAATCAAAAGCCATTAACCAATTTCAAGGAGTTATGTATGATTATATTCGTTTAGAACGACCGCCAACAACTTGA 2055 0.381 MKMNVFSKKNKNVMLFWWFGMIVQLCFLLCGCSEKTSLRGSSKIINGIGLSSKVKLNTEEDQQQLVVDNGIVSVTLSRPEGYILGISYNGIDNILESKNEQVDRGYFDVTWNEPGKEGETQRIHGTNFSVIAADENMVELSFSKSWTSSMMGTDVPINIDKRYIFRSGDSGFYSYVIFDRPEGMPAIEVDQIRYVYKLDEDRFKYMALSDTRQRSMPSMNDRITGQILAYKEAVLLTKPSNPQFRGEVDDKYQYSCENTDNTVHGWISFDSDAPIGFWMITPSNEFRNGGPTKQDLTSHVGPYTLSMFVSTHYAGKEVTMAFQDGETYKKAFGPVFVYLNTDSKDNDKLSLWTDAVQQSSKEVQSWPYDFIQSQDYFPPNQRGAVFGRLLVQDRYLKGGRFQCTNAYLGLALPGDAGSWQRESKGYQFWTRADAKGYFKINNVVPGDYNLYGWVPGFIGDYKYNGTITITPGGIINLNSLVYNPPRNGPTIWEIGIPDRSASEFHVPDPYPSLMNKLYVEQRKDKFRQYGLWERYTDMYPNDDLVYTVGVNKYRDWFYAQVTRSTENKTYEPTTWQIIFDHQHDIMNGNYTLQLALASAADADLQVRFNDPSIYPPHFATGRIGGDNAIARHGIHGLYWLFTIDVPSNLLVKGQNIIYLRQSKAINQFQGVMYDYIRLERPPTT 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02018 684 Pfam Polysaccharide lyase family 4, domain III 490 678 IPR029411 -
Trre16g02018 684 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Trre16g02018 684 Pfam Rhamnogalacturonate lyase family 57 248 IPR010325 -
Trre16g02018 684 Pfam Polysaccharide lyase family 4, domain II 405 475 IPR029413 -
Trre16g02018 684 CDD RGL4_M 381 480 IPR029413 -
Trre16g02018 684 CDD RGL4_C 492 679 - -
Trre16g02018 684 Gene3D - 379 479 - -
Trre16g02018 684 FunFam Rhamnogalacturonate lyase B 378 477 - -
Trre16g02018 684 CDD RGL4_N 64 347 - -
Trre16g02018 684 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 682 - -
Trre16g02018 684 Gene3D - 487 679 - -
Trre16g02018 684 Gene3D - 56 355 IPR014718 GO:0030246
Trre16g02018 684 SUPERFAMILY Galactose mutarotase-like 56 347 IPR011013 GO:0003824|GO:0005975|GO:0030246
Trre16g02018 684 SUPERFAMILY Starch-binding domain-like 377 479 IPR013784 GO:0030246
Trre16g02018 684 SUPERFAMILY Galactose-binding domain-like 487 679 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02018 Trre-Chr16 16140366 16149525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02018 51 683 Polysaccharide Lyase AT1G09910 54.788 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02018 K18195 - gmx:100776664 1041.18