Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02008 ATGGAGAGATTAGAGAGAAGGGGCAAGAAAGATCAAGAAAAGAAAGAAAAGAGAACAAGAAATTTTGTTGACTTAATAACAGGTAATAACAATAACAATGATGTATCAATAGGGTCACCATCACCACAATCACCAAGGCATATATTTGAGGTACCAATATCGGATTGTGACAGCACGGCGAGCAGCACGTACTGCAGTGCTGCTACGACGCCTCAACGGACGCAACACGGAGGAAAATCATCATCGCCAAGAGGAGAAGGAGGGTACCACCACCAATGGAGGAATATGATTGAGGGATTGAGGTTTAAATCAGTGAGGAGATTCTCTACCATTCCTTTGCTTACTGCTAGCTATGAAACTTCAAGGAGAAATTTGAGGAACAAATTGGCGCGAATAAGAACGGGTAATGAGGATGATGAGATTGATTTTGATGGTGTTATTGGTCTTGATGGTATTGCTAAGCCTTCTTGGAGAAATTTTAGCTATGAAGATCTTGCTGCTGCAACTGATAATTTCAATCCTGACAACATGATTGGTAAAGGTGGACATGCAGAAGTGTACAAAGGACAGTTACCTGATGGAACAATTGTAGCAGTAAAGAGGCTGGTGAGGGATGAAAAAGAAGTTGGAGACAAAGCTGGTGATTTCTTGTCAGAGCTTGGGATTATTGCTCACATTAACCATCCAAATTCAACACGTCTCATTGGTTTCGGAATTGAGCGTGGACTCTACTTTGTTCTACAATTTGCATCTCATGGAAGCCTTGCCTCTTTGCTCTTTGGTTCTGAATGTTTGGAATGGAAGATAAGATTCAAGGTAGCACTTGGAGTAGCCAAAGGGTTGCAATATCTCCATCAAGATTGTCCAAGAAGAATTATTCACAGAGACATCAAAGCCTCAAACATATTACTCAACCAAAATGATGAAGCTGAGATTTCAGATTTTGGATTGGCAAAGTGGCTACCAGATAAATGGGCACATCATGTTGTTTTTCCAATAGAAGGCACATTTGGGTATTTGGCTCCAGAGTATTTCATGCATGGACTTGTGGATGAGAAGACTGATGTATTTGCATTTGGAGTATTGTTACTTGAGCTCATGACAGGTCGTCGTGCAGTCGATTCAAATAGCAGGCAAAGTCTTGTCATTTGGGCTAAACCACTATTGGAGGGAAAACAAGTGAAAGAAATAGTAGATCCAAGATTAAAAGAACAATATGATCCAAATGAAATGATGCTTGCCATGGCAACAGCTTCCATGTGTATCCATCACATGTCCTCTAAAAGGCCATACATGAATCAGGTTGTGCTGCTATTGAAAGGAGAAGAGGTGGCTATGGACCTGACCCAAAAATCAATAGCACCAAGGTCACTCTTGTTAGATGCTTGTGATTTAGAAGACTATACTTGTTCTAGTTATTTGAATGATCTCACTCGTCACAAGGAATTAATCATGGAGTGA 1461 0.4059 MERLERRGKKDQEKKEKRTRNFVDLITGNNNNNDVSIGSPSPQSPRHIFEVPISDCDSTASSTYCSAATTPQRTQHGGKSSSPRGEGGYHHQWRNMIEGLRFKSVRRFSTIPLLTASYETSRRNLRNKLARIRTGNEDDEIDFDGVIGLDGIAKPSWRNFSYEDLAAATDNFNPDNMIGKGGHAEVYKGQLPDGTIVAVKRLVRDEKEVGDKAGDFLSELGIIAHINHPNSTRLIGFGIERGLYFVLQFASHGSLASLLFGSECLEWKIRFKVALGVAKGLQYLHQDCPRRIIHRDIKASNILLNQNDEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELMTGRRAVDSNSRQSLVIWAKPLLEGKQVKEIVDPRLKEQYDPNEMMLAMATASMCIHHMSSKRPYMNQVVLLLKGEEVAMDLTQKSIAPRSLLLDACDLEDYTCSSYLNDLTRHKELIME 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02008 486 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 150 249 - -
Trre16g02008 486 Gene3D Transferase(Phosphotransferase) domain 1 251 454 - -
Trre16g02008 486 MobiDBLite consensus disorder prediction 67 90 - -
Trre16g02008 486 SUPERFAMILY Protein kinase-like (PK-like) 156 443 IPR011009 -
Trre16g02008 486 ProSitePatterns Protein kinases ATP-binding region signature. 178 200 IPR017441 GO:0005524
Trre16g02008 486 MobiDBLite consensus disorder prediction 23 43 - -
Trre16g02008 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Trre16g02008 486 PANTHER OS08G0249100 PROTEIN 16 448 IPR046958 -
Trre16g02008 486 MobiDBLite consensus disorder prediction 1 49 - -
Trre16g02008 486 Gene3D Phosphorylase Kinase; domain 1 149 247 - -
Trre16g02008 486 SMART serkin_6 172 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02008 486 MobiDBLite consensus disorder prediction 67 81 - -
Trre16g02008 486 ProSiteProfiles Protein kinase domain profile. 172 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02008 486 Pfam Protein kinase domain 175 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02008 486 MobiDBLite consensus disorder prediction 1 22 - -
Trre16g02008 486 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 251 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02008 Trre-Chr16 16068565 16071487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02008 156 462 Trihelix Transcription Factor Family AT5G38560 41.875 3.50e-69 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre16g02008 Pkinase 1.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02008 - - tpra:123924518 860.136