Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02006 ATGGATTTGTCAAAAAATGAAAAGCAGATACTAAGAGTCCCAAAACTCGAAGGTTTTGGTGAGACGAATCTTAAATCAATTGTTGAAATTCAAATGGGTTCTACTACTACTACTGCTACTGACAACAACTTTGTTCCCAAGTTGGATTTCTTGGATTTGAACAAAGAAACTCGTTCGATAGGTATCGAGTTAGCTGAGTCTTCCAAAGATGCAGTTGATTGTGATAGTTCCAAAACTATTGCTACTACTCATACCATTGGCCAACGATCTTCAATCTACAGAGGAGTCACAAGGCACAGATGGACGGGTAGATATGAAGCACATCTATGGGACAACACCTCTAAACGAGAGGGCCAGATTAGGAAAGGGCGTCAAGGTGGGTATGATAAGGAAGAAAATGCAGCAAGGGCTTATGATTTGGCAGCACTCAAGTATTGGGGATCAGCAGCTATTACAAATTTTCCTGTTTCCGATTATGCAAAGGAATTGGAGGAGATGAAAGATGTCGGAAACCAAGAATTTGTTGCTTCACTGCGAAGGAAAAGCAGCGGTTTTTCTAGGGGCGTTTCCATATACCGCGGTGTTACAAGGCACCATCGACAGGGTAAATGGCAAGCACGAATTGGTCGAGTTGCTGGAAACAAAGATCTATACTTGGGATCATTCGCAACTGAAGTGGAAGCTGCAGAAGCATACGACATTGCTGCTATAAAGTTTAGAGGTGCAGACGCTGTAACCAATTTTGAGGCGAGTAGATACAACATGAGAGCTATATCGGCGACTTCTCTTCCAGTTAGCAGAGTAGTAAAACGCTTGAAACCTTCTCAAAAATCAGAGATCAATTTTCTGCCAATTGCTTCTGTACCGTATGGTCCTGCAACACAATATTTCCCCAACAATCAGTTCCACCATTTTAATCCTCCTACCAATGAAGAAAGCAGCACAGCAGAGTCTGCTCCGACTACAACCAATGCAGCAGCTGAGTTATTCCTTTGGCCCCGTCCGTCTCGTTGA 1014 0.43 MDLSKNEKQILRVPKLEGFGETNLKSIVEIQMGSTTTTATDNNFVPKLDFLDLNKETRSIGIELAESSKDAVDCDSSKTIATTHTIGQRSSIYRGVTRHRWTGRYEAHLWDNTSKREGQIRKGRQGGYDKEENAARAYDLAALKYWGSAAITNFPVSDYAKELEEMKDVGNQEFVASLRRKSSGFSRGVSIYRGVTRHHRQGKWQARIGRVAGNKDLYLGSFATEVEAAEAYDIAAIKFRGADAVTNFEASRYNMRAISATSLPVSRVVKRLKPSQKSEINFLPIASVPYGPATQYFPNNQFHHFNPPTNEESSTAESAPTTTNAAAELFLWPRPSR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02006 337 ProSiteProfiles AP2/ERF domain profile. 191 249 IPR001471 GO:0003700|GO:0006355
Trre16g02006 337 MobiDBLite consensus disorder prediction 300 322 - -
Trre16g02006 337 Gene3D AP2/ERF domain 92 157 IPR036955 GO:0003700|GO:0006355
Trre16g02006 337 Gene3D AP2/ERF domain 191 250 IPR036955 GO:0003700|GO:0006355
Trre16g02006 337 PRINTS Ethylene responsive element binding protein signature 231 251 IPR001471 GO:0003700|GO:0006355
Trre16g02006 337 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Trre16g02006 337 SUPERFAMILY DNA-binding domain 190 250 IPR016177 GO:0003677
Trre16g02006 337 CDD AP2 91 157 IPR001471 GO:0003700|GO:0006355
Trre16g02006 337 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 65 278 - -
Trre16g02006 337 FunFam AP2-like ethylene-responsive transcription factor 190 251 - -
Trre16g02006 337 SUPERFAMILY DNA-binding domain 91 157 IPR016177 GO:0003677
Trre16g02006 337 Pfam AP2 domain 191 241 IPR001471 GO:0003700|GO:0006355
Trre16g02006 337 Pfam AP2 domain 92 147 IPR001471 GO:0003700|GO:0006355
Trre16g02006 337 CDD AP2 190 251 IPR001471 GO:0003700|GO:0006355
Trre16g02006 337 SMART rav1_2 191 255 IPR001471 GO:0003700|GO:0006355
Trre16g02006 337 SMART rav1_2 92 161 IPR001471 GO:0003700|GO:0006355
Trre16g02006 337 ProSiteProfiles AP2/ERF domain profile. 92 155 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02006 Trre-Chr16 16063115 16065564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02006 70 273 AP2-EREBP Transcription Factor Family AT5G17430 72.596 1.20e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre16g02006 AP2 9.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02006 K09285 - mof:131153539 346.665