Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02005 ATGAATATGTTCTGTTCAACATGCTTTCATGTTTTGCTTCTCTTTGCTACTACACTAACACTATGTCTCCAACATAAGAATACTGCTAGTGCTTTAGGAAATGATACAGACCAATTATCATTACTAAGATTCAAAGAAACAATAGTAGATGACCCTTTTGGCATCTTGAAATCTTGGAATACTTCAACTTACTTTTGCAACTGGCATGGAGTCACATGCAGCCTCAAACATCAAAGGGTCACTTCCTTGAACCTACAAGGATATGACTTACTTGGATTGATACCACCTGAAATTGGAAACCTCACCTTTCTGAGGTATGTTAACCTTCAAAACAACAGCTTCTATGGTGAAATCCCACAAGAAATAGGTCATTTGTTTAGGCTGCGAGAGCTTTATCTGACCAATAACACATTAAAGGGTCAAATTCCAACCAACTTGTCTAGTTGTTCTGAACTCAAGAGTTTGAGTTTAACAGGAAACAGACTAGTTGGAAAAATACCAAAGGAGCTTGGTTATCTTACTAAGCTAGAAGTTCTATCAATTGGTATGAACAATTTGAGTGGTGAAATCCCTGCATCTATAGGAAACCTTTCATCTCTTAGTATTCTAATTTTAGGAATCAATAATTTGAATGGAAAATTACCTGAAGAGATAGGCCATTTGAAAAACTTGACACATATCTCTATTGCATCAAACAAACTATATGGTATGCTTCCTTTTACATTATTTAATATGTCATCTCTCACTTACTTCTCAGCTGGTGTCAATCAATTTAATGGCTCTTTACCTGCCAACATGTTCCTCACACTCCCTAATCTCCAACAATTTGGCATTGGTATGAATAAGATCTCGGGTCCTATTCCGATTTCGATATCAAATGCGACACAATTGTTGTTATTTAACATCCCTAGGAATAACTTTGTTGGACAAGTTCCAACTGGAATAGGAAATCTAAAAAATATTTGGTCTATTGCTATGGAATATAATCATCTAGGGAGTAATTCATCCAAGGACTTGGATTTCTTGACATCTTTGACAAACTGCACAAATTTAAAAGTGTTGGATTTAAATCTAAACAACTTTGGTGGTTCTTTACCAAACTCCATAGCTAACTTTTCAGGTCAATTGAATCAGTTTTATATTGGTGGAAATCAGATTACTGGAAATATTCCTGCAGGATTAGGAAATCTCATCAATTTGATTGGCTTGGACTTGGAGTTCAACCTTCTCTCAGGCTCCATTCCATCTTCTTTGGGAAATTTTAAAAAGATACAATCATTAACATTGAATGTAAACAAACTCTCAGGAAAGATTCCGTCATCACTTGGCAACCTTAGACAGGTATTTCAACTCGACTTATCAAACAATATGCTAGAAGGAAACATTCCTCCTAGTATTGGTAATTGCCAAATGTTACAATACTTGGACCTTTCAAATAACCACCTTAGTGGAACCATTCCTTGGCAAGTCATTGGTCTTCCTTCATTGTCAATGTTACTCAACTTATCCCATAATTCATTAAATGGAAGCCTACCCTTTGAAATTGGCAACCTGAAAAGCATCAATAAGTTGGATGCTTCTAAAAATTTTCTGTCTGGTGAGATTCCTGCAACAATTGGACAATGCATAAGTTTGGAATACCTTAACTTACAAGGGAATTTTTTCCAGGGAGCCATGCCTTCATCTTTAGCTTCATTGAAAGGTCTTCAATATTTAGATTTGTCACAAAACAACTTGTCAGGGTCAATTCCAGAAGGTCTAGAGAGTATTCCTGTTCTACAGTACTTGAATATTTCTTTTAACAAGTTGGATGGTGAAGTACCAACAGAAGGTGTGTTTAGAAATGAAAGTGCAATATTTGTGAAAAACAACAGTGACCTTTGTGGTGGTATCACAGGGTTACATCTCCAACCATTATTTTGGAAAAAAAAAACACACTGGAGAACTTCCAATTTTCCATCAACAATAGATCACCATGCAAAGATCTCATACAGAACTCTTTATCAAGCAACAAATGGATTCTCTTCTGACAACTTGATAGGGTCTGGTGGTTTTGGATTTGTATATAAAGGAATTCTGGAGTCAGAAGAAAGAGTTGTTGCTATAAAGGTCTTGAACCTTCAAGTTAAGGGAGCTCACAAGAGTTTCATCGCTGAATGTAATGCACTCAAAAGTATTCGTCATAGGAATCTTGTCAAGATTCTAACATGTTGCTCAAGTATGGATTACAATGGTAATGAGTTCAAAGCTTTAATTTTTGAGTACATGGAAAATGGAAGCTTAGATAAATGGCTACTTCCCGACTCCGAAATCAGAGATCAGCCAAATTTGAACCTTCTTCAAAGACTTAATATTCTCACAGATGTTGCTTCTGCAATACACTATCTACACTATGAATCTGAGCAGCCAATCATTCACTGCGATTTAAAGCCAAGCAATATCCTTCTTCATAATGACATGGTTGCTCATGTTAGTGATTTTGGACTAGCAAGAATTTTGTGTGCCATCAATGGTATCTCTGATCTACAAACTAGCACAGTTGGATTCAACGGAACAATCGGATATGCTCCTCCAGAATATGGAGTGGGAAGTCAAGTTTCAGCACAGGGTGATGTGTATAGCTTTGGAATTCTTTTACTGGAAATACTAACCAGAAGAAAACCGACAGATGAAATGTTTACAAATGGTATGAATCTTTATTCTTTTGTCAAGGTTTCACTGCCAGATAAACTCCTAGAGATAGTAGACTCAGCTCTACTCCCAATAGAATTGAAACACACCACTGTATCAACGACAGCAGAAGAAGAAAATAATAGTGATCAGAATCTAAGCCACTTGCACCCTAATGATCTGAAGCAGTGTTTACTTGAACTCTTTTATATTGGACTTGCTTGTTCAGCAGAGTCACCAAGAGAAAGAATAAATATGAAGGATGTCACTAGGGAGCTAGATGTAATTAGAAATGCTCTTTCTCGGAACTAG 2982 0.3642 MNMFCSTCFHVLLLFATTLTLCLQHKNTASALGNDTDQLSLLRFKETIVDDPFGILKSWNTSTYFCNWHGVTCSLKHQRVTSLNLQGYDLLGLIPPEIGNLTFLRYVNLQNNSFYGEIPQEIGHLFRLRELYLTNNTLKGQIPTNLSSCSELKSLSLTGNRLVGKIPKELGYLTKLEVLSIGMNNLSGEIPASIGNLSSLSILILGINNLNGKLPEEIGHLKNLTHISIASNKLYGMLPFTLFNMSSLTYFSAGVNQFNGSLPANMFLTLPNLQQFGIGMNKISGPIPISISNATQLLLFNIPRNNFVGQVPTGIGNLKNIWSIAMEYNHLGSNSSKDLDFLTSLTNCTNLKVLDLNLNNFGGSLPNSIANFSGQLNQFYIGGNQITGNIPAGLGNLINLIGLDLEFNLLSGSIPSSLGNFKKIQSLTLNVNKLSGKIPSSLGNLRQVFQLDLSNNMLEGNIPPSIGNCQMLQYLDLSNNHLSGTIPWQVIGLPSLSMLLNLSHNSLNGSLPFEIGNLKSINKLDASKNFLSGEIPATIGQCISLEYLNLQGNFFQGAMPSSLASLKGLQYLDLSQNNLSGSIPEGLESIPVLQYLNISFNKLDGEVPTEGVFRNESAIFVKNNSDLCGGITGLHLQPLFWKKKTHWRTSNFPSTIDHHAKISYRTLYQATNGFSSDNLIGSGGFGFVYKGILESEERVVAIKVLNLQVKGAHKSFIAECNALKSIRHRNLVKILTCCSSMDYNGNEFKALIFEYMENGSLDKWLLPDSEIRDQPNLNLLQRLNILTDVASAIHYLHYESEQPIIHCDLKPSNILLHNDMVAHVSDFGLARILCAINGISDLQTSTVGFNGTIGYAPPEYGVGSQVSAQGDVYSFGILLLEILTRRKPTDEMFTNGMNLYSFVKVSLPDKLLEIVDSALLPIELKHTTVSTTAEEENNSDQNLSHLHPNDLKQCLLELFYIGLACSAESPRERINMKDVTRELDVIRNALSRN 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02005 993 SMART serkin_6 674 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02005 993 Gene3D Ribonuclease Inhibitor 33 321 IPR032675 -
Trre16g02005 993 SUPERFAMILY L domain-like 375 629 - -
Trre16g02005 993 ProSitePatterns Protein kinases ATP-binding region signature. 680 703 IPR017441 GO:0005524
Trre16g02005 993 Gene3D Ribonuclease Inhibitor 333 635 IPR032675 -
Trre16g02005 993 Pfam Leucine Rich Repeat 472 488 IPR001611 GO:0005515
Trre16g02005 993 SUPERFAMILY L domain-like 36 331 - -
Trre16g02005 993 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 756 993 - -
Trre16g02005 993 Pfam Protein kinase domain 676 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02005 993 PRINTS Leucine-rich repeat signature 472 485 - -
Trre16g02005 993 PRINTS Leucine-rich repeat signature 566 579 - -
Trre16g02005 993 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 36 147 - -
Trre16g02005 993 FunFam LRR receptor-like serine/threonine-protein kinase EFR 337 645 - -
Trre16g02005 993 FunFam Leucine-rich repeat receptor protein kinase EMS1 166 265 - -
Trre16g02005 993 SUPERFAMILY Protein kinase-like (PK-like) 647 983 IPR011009 -
Trre16g02005 993 Gene3D Phosphorylase Kinase; domain 1 639 755 - -
Trre16g02005 993 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Trre16g02005 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Trre16g02005 993 SMART LRR_typ_2 125 149 IPR003591 -
Trre16g02005 993 SMART LRR_typ_2 173 197 IPR003591 -
Trre16g02005 993 SMART LRR_typ_2 566 589 IPR003591 -
Trre16g02005 993 SMART LRR_typ_2 221 245 IPR003591 -
Trre16g02005 993 SMART LRR_typ_2 397 421 IPR003591 -
Trre16g02005 993 SMART LRR_typ_2 590 615 IPR003591 -
Trre16g02005 993 SMART LRR_typ_2 445 469 IPR003591 -
Trre16g02005 993 FunFam LRR receptor-like serine/threonine-protein kinase EFR 645 755 - -
Trre16g02005 993 ProSiteProfiles Protein kinase domain profile. 674 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02005 993 Gene3D Transferase(Phosphotransferase) domain 1 756 993 - -
Trre16g02005 993 Pfam Leucine rich repeat 544 603 IPR001611 GO:0005515
Trre16g02005 993 PANTHER OS04G0122200 PROTEIN 219 981 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02005 Trre-Chr16 16042758 16046153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02005 34 987 Receptor kinase-like Gene Family AT3G47570 45.854 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre16g02005 Pkinase 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02005 - - qsu:111989208 1041.18